Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61670 - ( FUNCTIONS IN molecular_function unknown LOCATED IN endomembrane system integral to membrane CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G109801) Has 473 Blast hits to 471 proteins in 125 species Archae - 0 Bacteria - 2 Metazoa - 242 Fungi - 99 Plants - 92 Viruses - 0 Other Eukaryotes - 38 (source NCBI BLink) )

52 Proteins interacs with AT1G61670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2724

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.2647

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0613

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G36130

Predicted

Phenotypic Suppression

FSW = 0.0912

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0752

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G07890

Predicted

Phenotypic Suppression

FSW = 0.0646

Unknown

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT1G16030

Predicted

Phenotypic Suppression

FSW = 0.1085

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.2014

Unknown

CAT2 (CATALASE 2) CATALASE
AT3G45770

Predicted

Phenotypic Suppression

FSW = 0.0605

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2783

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT3G55400

Predicted

Phenotypic Enhancement

FSW = 0.1557

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G54670

Predicted

Phenotypic Enhancement

FSW = 0.1171

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT2G42590

Predicted

Phenotypic Suppression

FSW = 0.0294

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59880

Predicted

Phenotypic Suppression

FSW = 0.0321

Unknown

ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.3506

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT3G20920

Predicted

Phenotypic Enhancement

FSW = 0.1679

Unknown

TRANSLOCATION PROTEIN-RELATED
AT5G46430

Predicted

two hybrid

two hybrid

FSW = 0.0063

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.1927

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G23310

Predicted

Phenotypic Enhancement

FSW = 0.0468

Unknown

PROTEIN KINASE PUTATIVE
AT1G53165

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2276

Unknown

ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G15430

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1161

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G41380

Predicted

Synthetic Lethality

FSW = 0.0257

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.2207

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G28060

Predicted

Phenotypic Suppression

FSW = 0.3853

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Phenotypic Enhancement

FSW = 0.2340

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT3G16220

Predicted

two hybrid

two hybrid

FSW = 0.0174

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN REGULATION OF TRANSCRIPTION LOCATED IN CYTOPLASM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREDICTED EUKARYOTIC LIGT (INTERPROIPR009210) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA BINDING / CATALYTIC (TAIRAT3G162301) HAS 197 BLAST HITS TO 196 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 146 FUNGI - 9 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 24 (SOURCE NCBI BLINK)
AT1G18830Predicted

Phenotypic Suppression

FSW = 0.3112

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G30220

Predicted

Phenotypic Enhancement

FSW = 0.0454

Unknown

INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.2314

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G55255Predicted

Phenotypic Enhancement

FSW = 0.0305

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G15440

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0286

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G71530

Predicted

Phenotypic Enhancement

FSW = 0.1555

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.1045

Unknown

UNKNOWN PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.1975

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.3740

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G46620

Predicted

two hybrid

FSW = 0.0604

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.1328

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G06460

Predicted

Phenotypic Enhancement

FSW = 0.1272

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G14740

Predicted

Phenotypic Enhancement

FSW = 0.1908

Unknown

PHD FINGER FAMILY PROTEIN
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.3298

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT4G25960

Predicted

Phenotypic Suppression

FSW = 0.0626

Unknown

PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G19300

Predicted

Phenotypic Enhancement

FSW = 0.2382

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.3073

Unknown

UNKNOWN PROTEIN
AT5G52210

Predicted

Phenotypic Enhancement

FSW = 0.0940

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G66410

Predicted

Phenotypic Enhancement

FSW = 0.1633

Unknown

PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT1G76920

Predicted

Phenotypic Suppression

FSW = 0.3314

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.2214

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G21890

Predicted

Phenotypic Enhancement

FSW = 0.1134

Unknown

CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G31500

Predicted

Phenotypic Suppression

FSW = 0.0634

Unknown

CPK24 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.2173

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.4534

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G57270

Predicted

Phenotypic Suppression

FSW = 0.0958

Unknown

UNKNOWN PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454