Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79530 - ( GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )

29 Proteins interacs with AT1G79530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01830

Experimental

two hybrid

FSW = 0.0133

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT1G53720

Experimental

FSW = 0.0161

Unknown

CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G04120

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2227

Class C:

plasma membrane

cytosol

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G13440

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.1709

Class C:

plasma membrane

cytosol

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.2119

Class C:

plasma membrane

cytosol

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0040

Class C:

plasma membrane

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G62740

Predicted

Affinity Capture-Western

FSW = 0.0143

Class C:

plasma membrane

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT3G54960

Predicted

in vitro

FSW = 0.0282

Unknown

ATPDIL1-3 (PDI-LIKE 1-3) PROTEIN DISULFIDE ISOMERASE
AT4G37910

Predicted

pull down

FSW = 0.0144

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G13860

Predicted

two hybrid

FSW = 0.0167

Unknown

HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING
AT3G05630

Predicted

in vitro

in vivo

FSW = 0.0474

Unknown

PLDP2 PHOSPHOLIPASE D
AT2G36990

Predicted

pull down

FSW = 0.0866

Unknown

SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT3G13490

Predicted

pull down

FSW = 0.0680

Unknown

OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G56190

Predicted

in vitro

in vivo

Gene neighbors method

FSW = 0.0538

Unknown

PHOSPHOGLYCERATE KINASE PUTATIVE
AT5G55220

Predicted

pull down

FSW = 0.0570

Unknown

TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT3G26650

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2105

Unknown

GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0128

Unknown

ATHM1 ENZYME ACTIVATOR
AT1G12900

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.0816

Unknown

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G58470

Predicted

two hybrid

FSW = 0.0263

Unknown

TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
ATCG00180Predicted

pull down

FSW = 0.1036

Unknown

RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

pull down

FSW = 0.1104

Unknown

CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

pull down

FSW = 0.0560

Unknown

RNA POLYMERASE ALPHA SUBUNIT
AT3G12480

Predicted

two hybrid

two hybrid

FSW = 0.0459

Unknown

NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT4G31920

Predicted

pull down

FSW = 0.0313

Unknown

ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT2G41250

Predicted

pull down

FSW = 0.0282

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G04660

Predicted

two hybrid

FSW = 0.0237

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G14400

Predicted

two hybrid

FSW = 0.0035

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G50670

Predicted

two hybrid

FSW = 0.0909

Unknown

OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN
AT3G63460

Predicted

two hybrid

FSW = 0.0474

Unknown

WD-40 REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454