Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79530 - ( GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )
29 Proteins interacs with AT1G79530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01830 | Experimentaltwo hybrid | FSW = 0.0133
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT1G53720 | Experimental | FSW = 0.0161
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G04120 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2227
| Class C:plasma membranecytosol | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G13440 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.1709
| Class C:plasma membranecytosol | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G16300 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2119
| Class C:plasma membranecytosol | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0040
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G62740 | PredictedAffinity Capture-Western | FSW = 0.0143
| Class C:plasma membrane | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT3G54960 | Predictedin vitro | FSW = 0.0282
| Unknown | ATPDIL1-3 (PDI-LIKE 1-3) PROTEIN DISULFIDE ISOMERASE |
AT4G37910 | Predictedpull down | FSW = 0.0144
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G13860 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT3G05630 | Predictedin vitroin vivo | FSW = 0.0474
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G36990 | Predictedpull down | FSW = 0.0866
| Unknown | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT3G13490 | Predictedpull down | FSW = 0.0680
| Unknown | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G56190 | Predictedin vitroin vivoGene neighbors method | FSW = 0.0538
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G55220 | Predictedpull down | FSW = 0.0570
| Unknown | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT3G26650 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2105
| Unknown | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0128
| Unknown | ATHM1 ENZYME ACTIVATOR |
AT1G12900 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0816
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G58470 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
ATCG00180 | Predictedpull down | FSW = 0.1036
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00190 | Predictedpull down | FSW = 0.1104
| Unknown | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
ATCG00740 | Predictedpull down | FSW = 0.0560
| Unknown | RNA POLYMERASE ALPHA SUBUNIT |
AT3G12480 | Predictedtwo hybridtwo hybrid | FSW = 0.0459
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G31920 | Predictedpull down | FSW = 0.0313
| Unknown | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G41250 | Predictedpull down | FSW = 0.0282
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G04660 | Predictedtwo hybrid | FSW = 0.0237
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G14400 | Predictedtwo hybrid | FSW = 0.0035
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G50670 | Predictedtwo hybrid | FSW = 0.0909
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
AT3G63460 | Predictedtwo hybrid | FSW = 0.0474
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454