Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12480 - ( NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA binding / transcription factor )

36 Proteins interacs with AT3G12480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04120

Predicted

two hybrid

FSW = 0.0339

Class C:

nucleus

 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G43530

Predicted

two hybrid

FSW = 0.0459

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G16830

Predicted

interologs mapping

FSW = 0.0117

Class C:

nucleus

 NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT5G08190

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

in vitro

in vitro

in vitro

in vivo

in vivo

in vivo

two hybrid

Affinity Capture-MS

in vivo

in vitro

FSW = 0.2817

Class C:

nucleus

 NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR
AT3G13445

Predicted

in vivo

in vitro

Affinity Capture-Western

interologs mapping

Synthetic Lethality

FSW = 0.0298

Class C:

nucleus

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G54280

Predicted

Synthetic Rescue

FSW = 0.0467

Class C:

nucleus

 RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G47670

Predicted

two hybrid

FSW = 0.0566

Class C:

nucleus

 NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT4G14540

Predicted

two hybrid

FSW = 0.0539

Class C:

nucleus

 NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR
AT3G18610

Predicted

two hybrid

two hybrid

FSW = 0.0269

Class C:

nucleus

 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G27470

Predicted

two hybrid

FSW = 0.0319

Class C:

nucleus

 NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT1G55520

Predicted

Affinity Capture-Western

interologs mapping

in vitro

in vivo

Synthetic Lethality

Enriched domain pair

FSW = 0.0384

Class C:

nucleus

 TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G20010

Predicted

two hybrid

FSW = 0.0257

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G55750

Predicted

Synthetic Rescue

FSW = 0.0155

Class C:

nucleus

 TRANSCRIPTION FACTOR-RELATED
AT3G11130

Predicted

two hybrid

FSW = 0.0429

Unknown

 CLATHRIN HEAVY CHAIN PUTATIVE
AT1G54270

Predicted

interologs mapping

FSW = 0.0164

Unknown

 EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G31780

Predicted

two hybrid

two hybrid

FSW = 0.0037

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT3G08530

Predicted

two hybrid

two hybrid

FSW = 0.0394

Unknown

 CLATHRIN HEAVY CHAIN PUTATIVE
AT1G79530

Predicted

two hybrid

two hybrid

FSW = 0.0459

Unknown

 GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

two hybrid

FSW = 0.1035

Unknown

 GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT4G32760

Predicted

two hybrid

FSW = 0.0429

Unknown

 PROTEIN TRANSPORTER
AT3G53110

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0661

Unknown

 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT4G28360

Predicted

two hybrid

two hybrid

FSW = 0.0234

Unknown

 RIBOSOMAL PROTEIN L22 FAMILY PROTEIN
AT5G59180

Predicted

Synthetic Rescue

FSW = 0.0700

Unknown

 NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT5G19910

Predicted

Synthetic Rescue

FSW = 0.0766

Unknown

 SOH1 FAMILY PROTEIN
AT4G21710

Predicted

interologs mapping

FSW = 0.0385

Unknown

 NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G01510

Predicted

two hybrid

two hybrid

FSW = 0.0290

Unknown

 AN (ANGUSTIFOLIA) PROTEIN BINDING
AT1G15850

Predicted

two hybrid

FSW = 0.0821

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G55830Predicted

two hybrid

two hybrid

FSW = 0.0342

Unknown

 UNKNOWN PROTEIN
AT5G16870

Predicted

two hybrid

two hybrid

FSW = 0.0195

Unknown

 AMINOACYL-TRNA HYDROLASE
AT5G17650

Predicted

two hybrid

FSW = 0.0245

Unknown

 GLYCINE/PROLINE-RICH PROTEIN
AT1G54140

Predicted

two hybrid

FSW = 0.0451

Unknown

 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G03220

Predicted

Synthetic Rescue

FSW = 0.0661

Unknown

 TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT5G48640

Predicted

Synthetic Rescue

FSW = 0.0685

Unknown

 CYCLIN FAMILY PROTEIN
AT5G63610

Predicted

Synthetic Rescue

FSW = 0.0618

Unknown

 CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G21380

Predicted

two hybrid

FSW = 0.0900

Unknown

 VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN
AT4G29020

Predicted

two hybrid

FSW = 0.0195

Unknown

 GLYCINE-RICH PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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