Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60940 - ( transducin family protein / WD-40 repeat family protein )

21 Proteins interacs with AT5G60940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G23880

Experimental

FSW = 0.0665

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G43620

Experimental

FSW = 0.1600

Unknown

S-LOCUS PROTEIN-RELATED
AT1G30460

Experimental

FSW = 0.0849

Unknown

CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT4G27090

Predicted

two hybrid

FSW = 0.0277

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT2G20450

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0203

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G24310

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0152

Unknown

UNKNOWN PROTEIN
AT5G09470

Predicted

Gene fusion method

FSW = 0.1848

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890

Predicted

Gene fusion method

FSW = 0.2449

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G17460

Predicted

two hybrid

FSW = 0.0741

Unknown

HAT1 DNA BINDING / TRANSCRIPTION FACTOR
AT2G27380

Predicted

two hybrid

two hybrid

FSW = 0.1111

Unknown

ATEPR1 STRUCTURAL CONSTITUENT OF CELL WALL
AT5G01160

Predicted

two hybrid

FSW = 0.0267

Unknown

E-CADHERIN BINDING PROTEIN-RELATED
AT5G23420

Predicted

two hybrid

FSW = 0.0278

Unknown

HMGB6 TRANSCRIPTION FACTOR
AT1G04020

Predicted

two hybrid

Reconstituted Complex

two hybrid

in vitro

in vivo

in vivo

in vitro

Reconstituted Complex

FSW = 0.0178

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G17760

Predicted

in vitro

FSW = 0.0686

Unknown

CSTF77 PROTEIN BINDING
AT4G21070

Predicted

two hybrid

in vivo

in vitro

in vitro

in vivo

two hybrid

FSW = 0.1440

Unknown

ATBRCA1 UBIQUITIN-PROTEIN LIGASE
AT1G20696

Predicted

two hybrid

FSW = 0.0133

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT2G26060

Predicted

Gene fusion method

Co-expression

FSW = 0.1286

Unknown

EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING
AT2G20560

Predicted

Gene fusion method

FSW = 0.1001

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G03457

Predicted

Gene fusion method

FSW = 0.0758

Unknown

RNA-BINDING PROTEIN PUTATIVE
AT1G08290

Predicted

Gene fusion method

FSW = 0.2236

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3)
AT1G03510

Predicted

Gene fusion method

FSW = 0.0664

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454