Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60940 - ( transducin family protein / WD-40 repeat family protein )
21 Proteins interacs with AT5G60940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23880 | Experimental | FSW = 0.0665
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G43620 | Experimental | FSW = 0.1600
| Unknown | S-LOCUS PROTEIN-RELATED |
AT1G30460 | Experimental | FSW = 0.0849
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT4G27090 | Predictedtwo hybrid | FSW = 0.0277
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT2G20450 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0203
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G24310 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0152
| Unknown | UNKNOWN PROTEIN |
AT5G09470 | PredictedGene fusion method | FSW = 0.1848
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G37890 | PredictedGene fusion method | FSW = 0.2449
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G17460 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | HAT1 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G27380 | Predictedtwo hybridtwo hybrid | FSW = 0.1111
| Unknown | ATEPR1 STRUCTURAL CONSTITUENT OF CELL WALL |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G23420 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT1G04020 | Predictedtwo hybridReconstituted Complextwo hybridin vitroin vivoin vivoin vitroReconstituted Complex | FSW = 0.0178
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G17760 | Predictedin vitro | FSW = 0.0686
| Unknown | CSTF77 PROTEIN BINDING |
AT4G21070 | Predictedtwo hybridin vivoin vitroin vitroin vivotwo hybrid | FSW = 0.1440
| Unknown | ATBRCA1 UBIQUITIN-PROTEIN LIGASE |
AT1G20696 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT2G26060 | PredictedGene fusion methodCo-expression | FSW = 0.1286
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT2G20560 | PredictedGene fusion method | FSW = 0.1001
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G03457 | PredictedGene fusion method | FSW = 0.0758
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT1G08290 | PredictedGene fusion method | FSW = 0.2236
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3) |
AT1G03510 | PredictedGene fusion method | FSW = 0.0664
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454