Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08290 - ( zinc finger (C2H2 type) protein (WIP3) )

16 Proteins interacs with AT1G08290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G65687

Predicted

two hybrid

FSW = 0.0395

Unknown

TRANSPORTER-RELATED
AT1G50360

Predicted

two hybrid

FSW = 0.0529

Unknown

VIIIA MOTOR
AT1G60550

Predicted

Gene fusion method

FSW = 0.2250

Unknown

ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) CATALYTIC/ NAPHTHOATE SYNTHASE
AT5G09470

Predicted

Gene fusion method

FSW = 0.3247

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890

Predicted

Gene fusion method

FSW = 0.3712

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G21160

Predicted

Gene fusion method

FSW = 0.1793

Unknown

ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING
AT5G42190

Predicted

two hybrid

FSW = 0.0046

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G47240

Predicted

two hybrid

FSW = 0.0255

Unknown

ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT1G13290

Predicted

two hybrid

FSW = 0.1062

Unknown

DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR
AT2G26060

Predicted

Gene fusion method

FSW = 0.4318

Unknown

EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING
AT1G51220

Predicted

Gene fusion method

FSW = 0.2571

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP5)
AT5G60940

Predicted

Gene fusion method

FSW = 0.2236

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G19960

Predicted

Gene fusion method

FSW = 0.3000

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G12760

Predicted

Gene fusion method

FSW = 0.2571

Unknown

PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G20560

Predicted

Gene fusion method

FSW = 0.1648

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT3G46760

Predicted

Gene fusion method

FSW = 0.2571

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454