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AT3G56190 - ( ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) binding / soluble NSF attachment protein )

109 Proteins interacs with AT3G56190

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G33120	Predicted Reconstituted Complex Affinity Capture-Western interologs mapping interaction prediction	FSW = 0.0632	Class C: vacuole plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.3535	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.5037	Class C: vacuole plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G13490	Predicted interaction prediction	FSW = 0.0094	Class C: vacuole	AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.4710	Class C: vacuole	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.4959	Class C: vacuole	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G39510	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Co-purification	FSW = 0.1409	Class C: vacuole	SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT5G50440	Predicted in vitro in vivo Affinity Capture-MS	FSW = 0.0469	Class C: vacuole	MEMB12 (MEMBRIN 12) SNAP RECEPTOR
AT2G45200	Predicted Reconstituted Complex in vivo Affinity Capture-MS interaction prediction	FSW = 0.0604	Class C: vacuole	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT2G36900	Predicted in vivo in vitro Affinity Capture-MS	FSW = 0.0561	Class C: vacuole	MEMB11 (MEMBRIN 11) SNAP RECEPTOR
AT5G16830	Predicted in vitro in vitro in vitro Affinity Capture-MS	FSW = 0.0698	Class C: vacuole	SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR
AT5G46860	Predicted interaction prediction interologs mapping	FSW = 0.1309	Class C: vacuole	VAM3 SNAP RECEPTOR
AT2G05630	Predicted Affinity Capture-Western	FSW = 0.0272	Class C: vacuole	AUTOPHAGY 8D (APG8D)
AT1G62040	Predicted Affinity Capture-Western	FSW = 0.0414	Class C: vacuole	ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING
AT1G22740	Predicted co-fractionation Co-fractionation	FSW = 0.0131	Class C: vacuole	RABG3B GTP BINDING
AT4G04910	Predicted Synthetic Lethality Reconstituted Complex in vivo co-fractionation Co-fractionation Affinity Capture-Western in vivo Reconstituted Complex Affinity Capture-Western co-fractionation Co-fractionation Synthetic Lethality interologs mapping interaction prediction	FSW = 0.1011	Class C: vacuole	NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G25340	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.1574	Class C: vacuole	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT5G11150	Predicted interaction prediction interologs mapping	FSW = 0.1523	Class C: vacuole	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT1G79590	Predicted in vivo Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western	FSW = 0.0964	Class C: vacuole	SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT3G29100	Predicted interologs mapping interaction prediction	FSW = 0.1449	Class C: vacuole	VTI13 SNARE BINDING / RECEPTOR
AT5G10450	Predicted Affinity Capture-MS	FSW = 0.0390	Class C: plasma membrane	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G61210	Predicted two hybrid Affinity Capture-Western	FSW = 0.1042	Class C: plasma membrane	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5304	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.3395	Class C: plasma membrane	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420	Predicted Affinity Capture-MS	FSW = 0.4335	Class C: plasma membrane	MYB FAMILY TRANSCRIPTION FACTOR
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.3960	Class C: plasma membrane	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G16100	Predicted co-fractionation Co-fractionation	FSW = 0.0140	Class C: plasma membrane	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G61430	Predicted Affinity Capture-Western	FSW = 0.0561	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT5G08080	Predicted two hybrid two hybrid two hybrid Affinity Capture-Western in vitro	FSW = 0.0980	Class C: plasma membrane	SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR
AT1G11890	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-Western interaction prediction	FSW = 0.0430	Class C: plasma membrane	SEC22 TRANSPORTER
AT2G46170	Predicted two hybrid	FSW = 0.0143	Class C: plasma membrane	RETICULON FAMILY PROTEIN (RTNLB5)
AT1G61290	Predicted in vitro	FSW = 0.0512	Class C: plasma membrane	SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR
AT3G19960	Predicted Affinity Capture-MS	FSW = 0.0435	Class C: plasma membrane	ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR
AT1G04750	Predicted Reconstituted Complex	FSW = 0.0228	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G50310	Predicted Affinity Capture-MS	FSW = 0.2964	Class C: plasma membrane	STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.5164	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G22300	Predicted Affinity Capture-MS	FSW = 0.1555	Class C: plasma membrane	GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.4774	Class C: plasma membrane	ZINC ION BINDING
AT4G15780	Predicted in vitro	FSW = 0.1075	Class C: plasma membrane	ATVAMP724
AT1G26670	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western	FSW = 0.1860	Class C: plasma membrane	VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.3875	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.4803	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT5G58060	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western interaction prediction	FSW = 0.2051	Unknown	YKT61
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.3778	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.4252	Unknown	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT1G11870	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.5032	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.5217	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.4083	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT2G17520	Predicted synthetic growth defect	FSW = 0.0060	Unknown	IRE1A ENDORIBONUCLEASE/ KINASE
AT4G25630	Predicted Synthetic Lethality	FSW = 0.0047	Unknown	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.1405	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.3452	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G58000	Predicted two hybrid	FSW = 0.0071	Unknown	LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK)
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.5384	Unknown	HTA6 DNA BINDING
AT3G25940	Predicted two hybrid interaction prediction	FSW = 0.0060	Unknown	TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.3486	Unknown	HISTONE H2B PUTATIVE
AT5G26980	Predicted two hybrid two hybrid	FSW = 0.0540	Unknown	SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT1G28490	Predicted Affinity Capture-Western Affinity Capture-Western interaction prediction	FSW = 0.1930	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.3115	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT3G24350	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western two hybrid Co-purification interaction prediction	FSW = 0.1250	Unknown	SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT5G05760	Predicted two hybrid	FSW = 0.0838	Unknown	SYP31 (SYNTAXIN OF PLANTS 31) SNAP RECEPTOR
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.4147	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT3G05710	Predicted Affinity Capture-Western Affinity Capture-Western Co-purification interaction prediction	FSW = 0.0604	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT5G66020	Predicted synthetic growth defect	FSW = 0.0042	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT1G51740	Predicted Affinity Capture-Western	FSW = 0.0761	Unknown	SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.1867	Unknown	A37 PROTEIN HETERODIMERIZATION
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.4834	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.3948	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT1G77140	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0800	Unknown	VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT2G32270	Predicted interaction prediction	FSW = 0.0204	Unknown	ZIP3 ZINC ION TRANSMEMBRANE TRANSPORTER
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.5097	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.5432	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G11530	Predicted Affinity Capture-MS	FSW = 0.4097	Unknown	ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.4032	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.2029	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G33110	Predicted Affinity Capture-MS	FSW = 0.4883	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.1049	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.5006	Unknown	UNKNOWN PROTEIN
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.4793	Unknown	CORNICHON FAMILY PROTEIN
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.3855	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.4203	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.2294	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G29390	Predicted Affinity Capture-MS	FSW = 0.4267	Unknown	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.4353	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G05540	Predicted Affinity Capture-MS	FSW = 0.2189	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.3144	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.5269	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.3532	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.3137	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.3307	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.4159	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.5875	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G17980	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1249	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.3223	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G62930	Predicted interologs mapping	FSW = 0.0042	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.3678	Unknown	CD2-BINDING PROTEIN-RELATED
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.3272	Unknown	ATATG18A
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.5268	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.3851	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.4487	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.3022	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.4120	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G54750	Predicted Synthetic Lethality interaction prediction	FSW = 0.0349	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT1G16225	Predicted Affinity Capture-Western	FSW = 0.0761	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)
AT1G32270	Predicted two hybrid two hybrid	FSW = 0.0980	Unknown	ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT5G41770	Predicted interaction prediction	FSW = 0.0039	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G03220	Predicted interaction prediction	FSW = 0.0043	Unknown	TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT3G51520	Predicted interaction prediction	FSW = 0.0143	Unknown	DIACYLGLYCEROL ACYLTRANSFERASE FAMILY

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G56190 - ( ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) binding / soluble NSF attachment protein )

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