Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39510 - ( SGR4 (SHOOT GRAVITROPSIM 4) receptor )
25 Proteins interacs with AT5G39510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G52850
   | Experimentalelectron microscopy | FSW = 0.1465
| Class A:vacuolegolgiClass B:unclearendoplasmic reticulumClass D:extracellular (p = 0.86) | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING |
| AT5G11710
| Experimentalpull downReconstituted Complexcoimmunoprecipitation | FSW = 0.1016
| Class A:vacuolegolgiClass B:plastidendoplasmic reticulumcytoskeletonClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
| AT5G16830
| Experimentalinteraction detection methodelectron microscopyAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.4672
| Class A:vacuoleendoplasmic reticulumClass B:golgiClass D:nucleus (p = 0.78)mitochondrion (p = 0.82)golgi (p = 0.04) | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
| AT5G46860
| Experimentalinteraction detection methodAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.3991
| Class A:vacuoleendoplasmic reticulumClass B:golgiClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | VAM3 SNAP RECEPTOR |
| AT1G16240
| ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0566
| Class A:vacuoleClass B:nucleusgolgiendoplasmic reticulumClass D:nucleus (p = 0.78)golgi (p = 0.04) | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
| AT1G79590
| Experimentalcoimmunoprecipitation | FSW = 0.2707
| Class A:vacuoleClass B:golgiendoplasmic reticulumClass D:nucleus (p = 0.78)golgi (p = 0.04) | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
| AT5G26980
| Experimental | FSW = 0.2353
| Class A:golgiendoplasmic reticulumClass B:vacuoleClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
| AT2G47450
| Experimental | FSW = 0.1129
| Class B:vacuoleplastidgolgiendoplasmic reticulumClass D:mitochondrion (p = 0.82)extracellular (p = 0.86) | CAO (CHAOS) CHROMATIN BINDING |
| AT5G03940
| Experimental | FSW = 0.0443
| Class B:vacuoleplastidgolgiendoplasmic reticulumClass D:mitochondrion (p = 0.82) | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
| AT1G77140
| Experimentalinteraction detection method | FSW = 0.3698
| Class D:mitochondrion (p = 0.82) | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
| AT4G20780
| Experimental | FSW = 0.0519
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
| AT3G56190
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1409
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT2G38020
| PredictedAffinity Capture-Western | FSW = 0.3584
| Class C:vacuole | VCL1 (VACUOLELESS 1) |
| AT1G28490
| PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.3698
| Class C:golgiendoplasmic reticulum | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
| AT3G24350
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted ComplexReconstituted Complexinterologs mapping | FSW = 0.1321
| Class C:golgi | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
| AT3G05710
| PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-Western | FSW = 0.0876
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
| AT5G58060
| Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complexinterologs mappingCo-purification | FSW = 0.3991
| Unknown | YKT61 |
| AT1G26670
| PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4737
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
| AT5G19330
| PredictedAffinity Capture-Western | FSW = 0.0214
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT4G02195
| Predictedin vivoEnriched domain pairCo-expression | FSW = 0.2106
| Unknown | SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR |
| AT2G05170
| PredictedAffinity Capture-Western | FSW = 0.0882
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
| AT3G54860
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.2314
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
| AT1G08190
| PredictedAffinity Capture-Western | FSW = 0.2215
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
| AT1G12470
| PredictedAffinity Capture-Western | FSW = 0.2616
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
| AT2G17980
| Predictedinterologs mapping | FSW = 0.1216
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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