Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39510 - ( SGR4 (SHOOT GRAVITROPSIM 4) receptor )

25 Proteins interacs with AT5G39510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G52850

Experimental

electron microscopy

FSW = 0.1465

Class A:

vacuole

golgi

Class B:

unclear

endoplasmic reticulum

Class D:

extracellular (p = 0.86)

VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING
AT5G11710

Experimental

pull down

Reconstituted Complex

coimmunoprecipitation

FSW = 0.1016

Class A:

vacuole

golgi

Class B:

plastid

endoplasmic reticulum

cytoskeleton

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT5G16830

Experimental

interaction detection method

electron microscopy

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.4672

Class A:

vacuole

endoplasmic reticulum

Class B:

golgi

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

golgi (p = 0.04)

SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR
AT5G46860

Experimental

interaction detection method

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.3991

Class A:

vacuole

endoplasmic reticulum

Class B:

golgi

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

VAM3 SNAP RECEPTOR
AT1G16240

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0566

Class A:

vacuole

Class B:

nucleus

golgi

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

golgi (p = 0.04)

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT1G79590

Experimental

coimmunoprecipitation

FSW = 0.2707

Class A:

vacuole

Class B:

golgi

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

golgi (p = 0.04)

SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT5G26980

Experimental

FSW = 0.2353

Class A:

golgi

endoplasmic reticulum

Class B:

vacuole

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT2G47450

Experimental

FSW = 0.1129

Class B:

vacuole

plastid

golgi

endoplasmic reticulum

Class D:

mitochondrion (p = 0.82)

extracellular (p = 0.86)

CAO (CHAOS) CHROMATIN BINDING
AT5G03940

Experimental

FSW = 0.0443

Class B:

vacuole

plastid

golgi

endoplasmic reticulum

Class D:

mitochondrion (p = 0.82)

CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
AT1G77140

Experimental

interaction detection method

FSW = 0.3698

Class D:

mitochondrion (p = 0.82)

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT4G20780

Experimental

FSW = 0.0519

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE
AT3G56190

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.1409

Class C:

vacuole

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT2G38020

Predicted

Affinity Capture-Western

FSW = 0.3584

Class C:

vacuole

VCL1 (VACUOLELESS 1)
AT1G28490

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Co-purification

FSW = 0.3698

Class C:

golgi

endoplasmic reticulum

SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G24350

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Reconstituted Complex

Reconstituted Complex

interologs mapping

FSW = 0.1321

Class C:

golgi

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G05710

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0876

Class C:

endoplasmic reticulum

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT5G58060

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

interologs mapping

Co-purification

FSW = 0.3991

Unknown

YKT61
AT1G26670

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.4737

Unknown

VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT5G19330

Predicted

Affinity Capture-Western

FSW = 0.0214

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT4G02195

Predicted

in vivo

Enriched domain pair

Co-expression

FSW = 0.2106

Unknown

SYP42 (SYNTAXIN OF PLANTS 42) SNAP RECEPTOR
AT2G05170

Predicted

Affinity Capture-Western

FSW = 0.0882

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT3G54860

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.2314

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT1G08190

Predicted

Affinity Capture-Western

FSW = 0.2215

Unknown

VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT1G12470

Predicted

Affinity Capture-Western

FSW = 0.2616

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT2G17980

Predicted

interologs mapping

FSW = 0.1216

Unknown

ATSLY1 PROTEIN TRANSPORTER

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454