Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G11710 - ( epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related )
16 Proteins interacs with AT5G11710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52850 | Experimentalmolecular sievingpull downReconstituted Complexcoimmunoprecipitation | FSW = 0.2250
| Class A:vacuolegolgiClass B:unclearplastidcytoskeleton | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING |
AT5G39510 | Experimentalpull downReconstituted Complexcoimmunoprecipitation | FSW = 0.1016
| Class A:vacuolegolgiClass B:plastidendoplasmic reticulumcytoskeletonClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G22770 | Experimentalpull down | FSW = 0.0500
| Class B:vacuoleplastidplasma membranegolgicytoskeletonClass D:nucleus (p = 0.78) | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G23900 | Experimentalpull downReconstituted Complexcoimmunoprecipitation | FSW = 0.2066
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G46860 | PredictedAffinity Capture-MS | FSW = 0.1361
| Class C:vacuole | VAM3 SNAP RECEPTOR |
AT3G08530 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1416
| Class C:plastid | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0322
| Class C:plastid | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0087
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G11380 | Predictedtwo hybrid | FSW = 0.0874
| Unknown | BETA-ADAPTIN PUTATIVE |
AT4G32760 | PredictedAffinity Capture-WesternAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.2609
| Unknown | PROTEIN TRANSPORTER |
AT5G57015 | Predictedbiochemical | FSW = 0.0087
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G09800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0535
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G60500 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G25040 | Predictedtwo hybrid | FSW = 0.0561
| Unknown | ER LUMEN PROTEIN RETAINING RECEPTOR PUTATIVE / HDEL RECEPTOR PUTATIVE |
AT3G23270 | PredictedAffinity Capture-Western | FSW = 0.1818
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0301
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454