Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G46860 - ( VAM3 SNAP receptor )
39 Proteins interacs with AT5G46860| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G39510
   | Experimentalinteraction detection methodAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.3991
| Class A:vacuoleendoplasmic reticulumClass B:golgiClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
| AT5G16830
| Experimental | FSW = 0.2963
| Class A:vacuoleendoplasmic reticulumClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
| AT1G16240
| ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0707
| Class A:vacuoleClass B:nucleusendoplasmic reticulumClass D:nucleus (p = 0.78) | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
| AT1G79590
| ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2238
| Class A:vacuoleClass B:endoplasmic reticulumClass D:nucleus (p = 0.78) | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
| AT2G38020
| ExperimentalAffinity Capture-Western | FSW = 0.1839
| Class A:vacuoleClass B:endoplasmic reticulumClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | VCL1 (VACUOLELESS 1) |
| AT1G26670
| ExperimentalAffinity Capture-Western | FSW = 0.1905
| Class B:vacuoleplasma membraneendoplasmic reticulumClass D:nucleus (p = 0.78) | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G72770
| Experimental | FSW = 0.0181
| Unknown | HAB1 (HOMOLOGY TO ABI1) CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G02130
| Predictedinteraction predictiontwo hybrid | FSW = 0.0275
| Class C:vacuoleendoplasmic reticulum | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT2G33120
| PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0650
| Class C:vacuole | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
| AT5G11710
| PredictedAffinity Capture-MS | FSW = 0.1361
| Class C:vacuole | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
| AT3G56190
| Predictedinteraction predictioninterologs mapping | FSW = 0.1309
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT3G28715
| Predictedinteraction prediction | FSW = 0.0049
| Class C:vacuole | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT1G16920
| Predictedinteraction predictiontwo hybrid | FSW = 0.0309
| Class C:vacuole | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
| AT2G45200
| PredictedReconstituted Complex | FSW = 0.0620
| Class C:vacuole | GOS12 (GOLGI SNARE 12) SNARE BINDING |
| AT3G62870
| Predictedtwo hybrid | FSW = 0.0107
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT4G04910
| PredictedAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0806
| Class C:vacuole | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G29100
| Predictedinteraction predictioninterologs mappingEnriched domain pairCo-expression | FSW = 0.3006
| Class C:vacuole | VTI13 SNARE BINDING / RECEPTOR |
| AT5G13710
| PredictedSynthetic Rescue | FSW = 0.0049
| Class C:vacuole | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
| AT3G26590
| Predictedbiochemical | FSW = 0.0052
| Class C:vacuole | MATE EFFLUX FAMILY PROTEIN |
| AT1G28490
| PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.2739
| Class C:endoplasmic reticulum | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
| AT5G58060
| PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.2407
| Unknown | YKT61 |
| AT3G08530
| Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0613
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT3G47370
| Predictedbiochemical | FSW = 0.0046
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT5G52640
| Predictedtwo hybridinteraction prediction | FSW = 0.0058
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT4G32760
| Predictedtwo hybrid | FSW = 0.0966
| Unknown | PROTEIN TRANSPORTER |
| AT1G71820
| PredictedPhenotypic Enhancement | FSW = 0.0517
| Unknown | SEC6 |
| AT3G24350
| Predictedco-fractionationCo-fractionation | FSW = 0.2057
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
| AT1G55130
| Predictedtwo hybridinteraction prediction | FSW = 0.0582
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
| AT4G15900
| Predictedinteraction predictiontwo hybridtwo hybridtwo hybrid | FSW = 0.0035
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G77140
| PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementinteraction predictionShared biological functionEnriched domain pairCo-expression | FSW = 0.1633
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
| AT3G54860
| PredictedAffinity Capture-Western | FSW = 0.1097
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
| AT5G06140
| Predictedtwo hybridtwo hybrid | FSW = 0.0289
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
| AT5G12210
| Predictedtwo hybridtwo hybrid | FSW = 0.0582
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
| AT3G01340
| PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G26550
| Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0855
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
| AT1G12470
| PredictedPhenotypic Enhancement | FSW = 0.1378
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
| AT1G34580
| Predictedbiochemical | FSW = 0.0126
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT4G14240
| Predictedbiochemical | FSW = 0.0046
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT1G21380
| Predictedtwo hybrid | FSW = 0.0837
| Unknown | VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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