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AT1G02130 - ( ARA-5 (ARABIDOPSIS RAS 5) GTP binding )

107 Proteins interacs with AT1G02130

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G01470	Predicted Synthetic Lethality	FSW = 0.0498	Class C: vacuole plasma membrane endoplasmic reticulum	STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING
AT4G17530	Predicted Phylogenetic profile method Co-expression	FSW = 0.5661	Class C: vacuole plasma membrane	ATRAB1C GTP BINDING
AT5G45750	Predicted Phylogenetic profile method Co-expression	FSW = 0.5274	Class C: vacuole plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G52280	Predicted Phylogenetic profile method	FSW = 0.1926	Class C: vacuole plasma membrane	ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING
AT1G12360	Predicted Synthetic Lethality	FSW = 0.0814	Class C: vacuole plasma membrane	KEU (KEULE) PROTEIN TRANSPORTER
AT3G46060	Predicted Shared biological function Phylogenetic profile method	FSW = 0.5442	Class C: vacuole plasma membrane	ATRAB8A GTP BINDING
AT1G16920	Predicted Affinity Capture-Western interologs mapping Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5409	Class C: vacuole plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT2G44610	Predicted interaction prediction Shared biological function Co-expression	FSW = 0.2216	Class C: vacuole plasma membrane	RAB6A GTP BINDING / PROTEIN BINDING
AT5G47520	Predicted Phylogenetic profile method	FSW = 0.4780	Class C: vacuole plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT1G73430	Predicted Reconstituted Complex interologs mapping interaction prediction	FSW = 0.0955	Class C: vacuole golgi	SEC34-LIKE FAMILY PROTEIN
AT5G46860	Predicted interaction prediction two hybrid	FSW = 0.0275	Class C: vacuole endoplasmic reticulum	VAM3 SNAP RECEPTOR
AT5G41790	Predicted Affinity Capture-Western interologs mapping Synthetic Lethality	FSW = 0.0374	Class C: vacuole	CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G55190	Predicted Affinity Capture-Western two hybrid	FSW = 0.1397	Class C: vacuole	PRA7
AT1G22740	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2441	Class C: vacuole	RABG3B GTP BINDING
AT4G09720	Predicted Phylogenetic profile method	FSW = 0.1651	Class C: vacuole	RAS-RELATED GTP-BINDING PROTEIN PUTATIVE
AT1G64330	Predicted Affinity Capture-Western interologs mapping Synthetic Lethality	FSW = 0.0788	Class C: vacuole	MYOSIN HEAVY CHAIN-RELATED
AT2G30710	Predicted Synthetic Rescue Phenotypic Suppression interologs mapping interologs mapping biochemical	FSW = 0.0690	Class C: vacuole	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G07670	Predicted Phenotypic Suppression interologs mapping	FSW = 0.0584	Class C: plasma membrane endoplasmic reticulum	CALCIUM-TRANSPORTING ATPASE
AT1G11890	Predicted Synthetic Lethality Reconstituted Complex Phenotypic Suppression interologs mapping interologs mapping Synthetic Rescue interaction prediction	FSW = 0.0494	Class C: plasma membrane endoplasmic reticulum	SEC22 TRANSPORTER
AT4G34580	Predicted synthetic growth defect	FSW = 0.0721	Class C: plasma membrane	COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT1G19650	Predicted synthetic growth defect	FSW = 0.0466	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT5G47200	Predicted Phylogenetic profile method Co-expression	FSW = 0.5458	Class C: plasma membrane	ATRAB1A GTP BINDING
AT1G43890	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5566	Class C: plasma membrane	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730	Predicted Phylogenetic profile method Co-expression	FSW = 0.3792	Class C: plasma membrane	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G12370	Predicted Synthetic Lethality	FSW = 0.0628	Class C: plasma membrane	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT1G71820	Predicted Synthetic Lethality	FSW = 0.1236	Class C: plasma membrane	SEC6
AT3G07410	Predicted Phylogenetic profile method	FSW = 0.4865	Class C: plasma membrane	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550	Predicted Phylogenetic profile method	FSW = 0.4615	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.3176	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430	Predicted interologs mapping Phylogenetic profile method	FSW = 0.5252	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G06400	Predicted Affinity Capture-Western interologs mapping Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5573	Class C: plasma membrane	ARA-2 GTP BINDING
AT1G07410	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4800	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59150	Predicted Phylogenetic profile method	FSW = 0.5008	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT4G39990	Predicted Phylogenetic profile method	FSW = 0.4865	Class C: plasma membrane	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT3G46830	Predicted Phylogenetic profile method	FSW = 0.4586	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G73640	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4905	Class C: plasma membrane	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT4G18800	Predicted Phylogenetic profile method	FSW = 0.2317	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G65270	Predicted Phylogenetic profile method	FSW = 0.4501	Class C: plasma membrane	ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT3G53610	Predicted Phylogenetic profile method Co-expression	FSW = 0.5071	Class C: plasma membrane	ATRAB8 GTP BINDING
AT3G09900	Predicted Synthetic Lethality Affinity Capture-MS interaction prediction Phylogenetic profile method Co-expression	FSW = 0.5495	Class C: plasma membrane	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G09630	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4662	Class C: plasma membrane	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT2G43130	Predicted Shared biological function Phylogenetic profile method	FSW = 0.4959	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G20970	Predicted Synthetic Lethality	FSW = 0.0924	Class C: plasma membrane	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT5G03520	Predicted Phylogenetic profile method Co-expression	FSW = 0.4390	Class C: golgi	ATRAB8C GTP BINDING
AT1G04260	Predicted Affinity Capture-Western two hybrid	FSW = 0.1232	Class C: golgi	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT3G24350	Predicted Co-purification Affinity Capture-Western Co-purification interologs mapping interaction prediction	FSW = 0.1535	Class C: golgi	SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G54840	Predicted Phylogenetic profile method	FSW = 0.1108	Class C: endoplasmic reticulum	ARA6 GTP BINDING / GTPASE
AT3G59500	Predicted two hybrid Reconstituted Complex two hybrid interaction prediction	FSW = 0.1312	Class C: endoplasmic reticulum	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT1G13980	Predicted interologs mapping	FSW = 0.0154	Class C: endoplasmic reticulum	GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT3G05710	Predicted Co-purification	FSW = 0.0699	Class C: endoplasmic reticulum	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.4905	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT3G10330	Predicted interaction prediction	FSW = 0.0082	Unknown	TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT5G45400	Predicted interologs mapping interologs mapping	FSW = 0.0073	Unknown	REPLICATION PROTEIN PUTATIVE
AT2G36170	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT2G41630	Predicted two hybrid	FSW = 0.0074	Unknown	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G58000	Predicted Affinity Capture-Western	FSW = 0.0154	Unknown	LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK)
AT3G16980	Predicted two hybrid interaction prediction	FSW = 0.0080	Unknown	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G01200	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4986	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT2G22290	Predicted interologs mapping Phylogenetic profile method Co-expression	FSW = 0.2353	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT3G06540	Predicted two hybrid Phenotypic Suppression biochemical Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS interaction prediction Enriched domain pair Co-expression	FSW = 0.1304	Unknown	GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN
AT3G25980	Predicted biochemical	FSW = 0.0059	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT1G21170	Predicted Synthetic Lethality	FSW = 0.0847	Unknown	SEC5B
AT2G36300	Predicted interaction prediction two hybrid two hybrid Synthetic Lethality Synthetic Lethality Reconstituted Complex Affinity Capture-Western	FSW = 0.2213	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT3G56640	Predicted Synthetic Lethality	FSW = 0.0706	Unknown	EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G60860	Predicted interologs mapping Synthetic Lethality	FSW = 0.0399	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT3G63150	Predicted Phenotypic Enhancement	FSW = 0.0039	Unknown	MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT4G01400	Predicted interologs mapping	FSW = 0.0442	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK)
AT5G04540	Predicted interologs mapping	FSW = 0.0094	Unknown	PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE
AT5G09350	Predicted Synthetic Lethality Enriched domain pair	FSW = 0.1745	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09550	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western two hybrid interaction prediction Enriched domain pair Co-expression	FSW = 0.2143	Unknown	RAB GDP-DISSOCIATION INHIBITOR
AT5G10260	Predicted interologs mapping	FSW = 0.1229	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G12210	Predicted biochemical fluorescence acceptor donor pair fluorescence acceptor donor pair Synthetic Lethality	FSW = 0.0468	Unknown	GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE
AT5G50430	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0369	Unknown	UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE
AT5G54750	Predicted Synthetic Lethality interologs mapping Affinity Capture-Western interaction prediction	FSW = 0.1594	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT1G80500	Predicted Affinity Capture-Western	FSW = 0.0194	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G17980	Predicted Synthetic Rescue Synthetic Rescue Phenotypic Suppression Phenotypic Suppression interologs mapping Synthetic Rescue	FSW = 0.1591	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT3G02460	Predicted synthetic growth defect interologs mapping	FSW = 0.0096	Unknown	PLANT ADHESION MOLECULE PUTATIVE
AT3G05000	Predicted Affinity Capture-Western	FSW = 0.1215	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G58460	Predicted two hybrid	FSW = 0.0095	Unknown	ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)
AT4G14160	Predicted Synthetic Lethality	FSW = 0.0960	Unknown	TRANSPORT PROTEIN PUTATIVE
AT4G34450	Predicted Synthetic Lethality	FSW = 0.1220	Unknown	COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G19610	Predicted interologs mapping	FSW = 0.0162	Unknown	SEC7 DOMAIN-CONTAINING PROTEIN
AT5G50550	Predicted Synthetic Lethality	FSW = 0.0494	Unknown	WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE
AT5G61330	Predicted interologs mapping interaction prediction	FSW = 0.0119	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT2G44100	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid Shared biological function Enriched domain pair Co-expression	FSW = 0.1363	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT1G17280	Predicted Affinity Capture-MS	FSW = 0.0191	Unknown	UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE
AT3G12070	Predicted biochemical fluorescence acceptor donor pair fluorescence acceptor donor pair Synthetic Lethality	FSW = 0.0473	Unknown	GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE
AT1G01960	Predicted interologs mapping Synthetic Lethality	FSW = 0.0600	Unknown	EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G51160	Predicted interologs mapping interaction prediction	FSW = 0.1259	Unknown	SYNBINDIN PUTATIVE
AT2G18840	Predicted Reconstituted Complex	FSW = 0.1003	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G30890	Predicted two hybrid Reconstituted Complex two hybrid	FSW = 0.1272	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT1G02010	Predicted Synthetic Lethality	FSW = 0.0847	Unknown	SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT1G05520	Predicted Synthetic Lethality	FSW = 0.0869	Unknown	TRANSPORT PROTEIN PUTATIVE
AT1G32270	Predicted two hybrid	FSW = 0.0204	Unknown	ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT3G59520	Predicted two hybrid	FSW = 0.0094	Unknown	ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13)
AT3G49320	Predicted two hybrid	FSW = 0.0093	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 13 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METAL-DEPENDENT PROTEIN HYDROLASE (INTERPROIPR003226) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G419701) HAS 458 BLAST HITS TO 456 PROTEINS IN 209 SPECIES ARCHAE - 0 BACTERIA - 122 METAZOA - 129 FUNGI - 87 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 91 (SOURCE NCBI BLINK)
AT5G03530	Predicted Phylogenetic profile method Co-expression	FSW = 0.5503	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G60860	Predicted Phylogenetic profile method	FSW = 0.4694	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT2G31680	Predicted Phylogenetic profile method	FSW = 0.4757	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method	FSW = 0.3167	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT5G47960	Predicted Phylogenetic profile method	FSW = 0.4694	Unknown	ATRABA4C GTP BINDING
AT3G15060	Predicted Phylogenetic profile method	FSW = 0.4694	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT3G12160	Predicted Phylogenetic profile method	FSW = 0.4433	Unknown	RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT2G33870	Predicted Phylogenetic profile method	FSW = 0.4694	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.5247	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT3G09910	Predicted Phylogenetic profile method	FSW = 0.4208	Unknown	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT5G39620	Predicted Phylogenetic profile method	FSW = 0.2033	Unknown	ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G02130 - ( ARA-5 (ARABIDOPSIS RAS 5) GTP binding )

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