Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13710 - ( SMT1 (STEROL METHYLTRANSFERASE 1) sterol 24-C-methyltransferase )
74 Proteins interacs with AT5G13710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0698
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G46860 | PredictedSynthetic Rescue | FSW = 0.0049
| Class C:vacuole | VAM3 SNAP RECEPTOR |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0686
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G26975 | Predictedinterologs mapping | FSW = 0.0260
| Class C:vacuole | COPPER TRANSPORTER PUTATIVE |
AT4G01370 | PredictedPhenotypic Suppression | FSW = 0.0119
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT5G67630 | PredictedPhenotypic Enhancement | FSW = 0.0281
| Unknown | DNA HELICASE PUTATIVE |
AT1G18640 | PredictedPhenotypic Suppression | FSW = 0.0417
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0330
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT4G00690 | Predictedinteraction prediction | FSW = 0.0416
| Unknown | ULP1B (UB-LIKE PROTEASE 1B) CYSTEINE-TYPE PEPTIDASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0640
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.0860
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G79940 | Predictedinterologs mapping | FSW = 0.1426
| Unknown | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT4G21180 | PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0335
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT2G17520 | Predictedsynthetic growth defect | FSW = 0.0656
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT4G07950 | PredictedPhenotypic Enhancement | FSW = 0.0403
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G57660 | PredictedPhenotypic Enhancement | FSW = 0.0103
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT3G13940 | PredictedPhenotypic Suppression | FSW = 0.0508
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0080
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G35670 | PredictedPhenotypic Enhancement | FSW = 0.0520
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT1G55750 | PredictedPhenotypic Enhancement | FSW = 0.0386
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G21010 | PredictedPhenotypic Enhancement | FSW = 0.0598
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT3G52940 | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | FK (FACKEL) DELTA14-STEROL REDUCTASE |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0360
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.0288
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G25150 | PredictedPhenotypic Enhancement | FSW = 0.0438
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.0567
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G18280 | PredictedSynthetic Rescue | FSW = 0.0941
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0246
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G20330 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0285
| Unknown | SMT2 (STEROL METHYLTRANSFERASE 2) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE |
AT4G36480 | PredictedPhenotypic Enhancement | FSW = 0.0104
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | ARV1 |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.1020
| Unknown | SOH1 FAMILY PROTEIN |
AT2G22310 | PredictedPhenotypic Enhancement | FSW = 0.1071
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0821
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G10030 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0330
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT1G04950 | PredictedPhenotypic Enhancement | FSW = 0.0247
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G06080 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0834
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G06790 | PredictedPhenotypic Enhancement | FSW = 0.0171
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G32750 | PredictedPhenotypic Enhancement | FSW = 0.0497
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1024
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G69640 | PredictedPhenotypic Enhancement | FSW = 0.0791
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G32730 | PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G34090 | PredictedSynthetic Rescue | FSW = 0.0519
| Unknown | MEE18 (MATERNAL EFFECT EMBRYO ARREST 18) |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0676
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0398
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.1087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0718
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G55380 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0759
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G19006 | PredictedSynthetic Rescue | FSW = 0.0212
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.1012
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.0676
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT3G22142 | PredictedPhenotypic Suppression | FSW = 0.0278
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT5G27970 | Predictedinterologs mappingPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1623
| Unknown | BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0278
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G50430 | PredictedPhenotypic Enhancement | FSW = 0.0210
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0133
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G14530 | PredictedPhenotypic Enhancement | FSW = 0.0342
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G65180 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT1G14290 | Predictedinterologs mapping | FSW = 0.0907
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT3G46460 | Predictedinterologs mapping | FSW = 0.0877
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT1G17280 | Predictedinterologs mapping | FSW = 0.0271
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
AT1G32270 | PredictedSynthetic Rescue | FSW = 0.0080
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT2G22425 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | PEPTIDASE |
AT3G06910 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT1G68000 | Predictedtwo hybrid | FSW = 0.0659
| Unknown | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1) CDP-DIACYLGLYCEROL-INOSITOL 3-PHOSPHATIDYLTRANSFERASE |
AT4G38570 | Predictedinteraction prediction | FSW = 0.0577
| Unknown | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT4G40042 | Predictedinteraction prediction | FSW = 0.0386
| Unknown | PEPTIDASE |
AT1G76090 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0262
| Unknown | SMT3 (STEROL METHYLTRANSFERASE 3) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ STEROL 24-C-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454