Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03940 - ( CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA binding / GTP binding / mRNA binding / signal sequence binding )

24 Proteins interacs with AT5G03940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G47450

Experimental

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Reconstituted Complex

Co-crystal Structure

Co-crystallization

in vitro

FSW = 0.1634

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 CAO (CHAOS) CHROMATIN BINDING
AT2G45770

Experimental

FSW = 0.0664

Class A:

plastid

Class D:

plastid (p = 0.78)

 CPFTSY 7S RNA BINDING / GTP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G78300

Experimental

FSW = 0.0149

Class B:

vacuole

plastid

plasma membrane

peroxisome

nucleus

cytosol

cytoskeleton

 GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G39510

Experimental

FSW = 0.0443

Class B:

vacuole

plastid

golgi

endoplasmic reticulum

Class D:

mitochondrion (p = 0.82)

 SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT4G16110

Experimental

FSW = 0.0370

Unknown

 ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT2G43790

Experimental

competition binding

FSW = 0.0161

Unknown

 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT2G33800

Predicted

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FSW = 0.1314

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.1021

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT3G10690

Predicted

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FSW = 0.1787

Class C:

plastid

 DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT5G52440

Predicted

Shared biological function

Co-expression

FSW = 0.2143

Class C:

plastid

 HCF106 PROTON MOTIVE FORCE DEPENDENT PROTEIN TRANSMEMBRANE TRANSPORTER
AT2G20890

Predicted

Shared biological function

Co-expression

FSW = 0.0704

Class C:

plastid

 PSB29
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0321

Class C:

plastid

 ATHM1 ENZYME ACTIVATOR
AT2G22230

Predicted

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FSW = 0.3175

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
ATCG00160Predicted

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FSW = 0.0945

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.0806

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00750Predicted

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FSW = 0.0726

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S11
AT2G36880

Predicted

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FSW = 0.0613

Unknown

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT4G02930

Predicted

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FSW = 0.1299

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT5G26860

Predicted

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FSW = 0.1201

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G48900

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1254

Unknown

 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 3 / SRP54 (SRP-54C)
AT5G49500

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3030

Unknown

 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 2 / SRP54 (SRP-54B)
AT1G15310

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1254

Unknown

 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G20060

Predicted

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FSW = 0.1299

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT4G25730

Predicted

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FSW = 0.2118

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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