Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G61290 - ( SYP124 (SYNTAXIN OF PLANTS 124) SNAP receptor )

11 Proteins interacs with AT1G61290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G61210

Predicted

in vitro

in vitro

in vivo

Enriched domain pair

Co-expression

FSW = 0.2048

Class C:

plasma membrane

cytosol

 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT1G09070

Predicted

in vivo

two hybrid

FSW = 0.1641

Class C:

plasma membrane

 SRC2 (SOYBEAN GENE REGULATED BY COLD-2) PROTEIN BINDING
AT3G56190

Predicted

in vitro

FSW = 0.0512

Class C:

plasma membrane

 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT4G12120

Predicted

two hybrid

in vitro

in vitro

in vivo

two hybrid

Enriched domain pair

Co-expression

FSW = 0.1817

Class C:

plasma membrane

 SEC1B PROTEIN TRANSPORTER
AT1G13890

Predicted

in vitro

in vitro

in vitro

in vivo

Enriched domain pair

Co-expression

FSW = 0.1170

Class C:

cytosol

 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) SNAP RECEPTOR
AT4G04910

Predicted

in vitro

in vivo

FSW = 0.0754

Unknown

 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0107

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G79590

Predicted

in vitro

Enriched domain pair

Co-expression

FSW = 0.0790

Unknown

 SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT1G25510

Predicted

two hybrid

FSW = 0.0861

Unknown

 ASPARTYL PROTEASE FAMILY PROTEIN
AT2G28360

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1337

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT3G29070

Predicted

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1429

Unknown

 PROTEIN TRANSMEMBRANE TRANSPORTER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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