Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72480 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN Golgi apparatus EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G010701) Has 422 Blast hits to 420 proteins in 121 species Archae - 0 Bacteria - 0 Metazoa - 208 Fungi - 101 Plants - 83 Viruses - 0 Other Eukaryotes - 30 (source NCBI BLink) )

77 Proteins interacs with AT1G72480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G13650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4404

Class C:

golgi

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.4909

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.1306

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.4310

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.3115

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.4511

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.4801

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G04940

Predicted

Affinity Capture-RNA

FSW = 0.0246

Unknown

SCRAMBLASE-RELATED
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.3934

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.0706

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.5325

Unknown

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G24400

Predicted

Affinity Capture-MS

FSW = 0.2482

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT3G16950

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4557

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3003

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G15450

Predicted

Affinity Capture-RNA

FSW = 0.0288

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.4959

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.3703

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.5377

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.2385

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT3G55810

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

PYRUVATE KINASE PUTATIVE
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.4702

Unknown

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G15080

Predicted

two hybrid

FSW = 0.0182

Unknown

LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.3133

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0382

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.4310

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.4750

Unknown

ZINC ION BINDING
AT1G09640

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.4531

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G07640

Predicted

Affinity Capture-MS

FSW = 0.0659

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT5G59950

Predicted

Affinity Capture-MS

FSW = 0.1161

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.4321

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G54840

Predicted

interologs mapping

FSW = 0.0108

Unknown

SGP1 GTP BINDING
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.4843

Unknown

HTA6 DNA BINDING
AT1G06960

Predicted

Affinity Capture-MS

FSW = 0.0042

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.3800

Unknown

HISTONE H2B PUTATIVE
AT2G41380

Predicted

Affinity Capture-MS

FSW = 0.0180

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.1929

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G07140

Predicted

two hybrid

FSW = 0.0026

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT3G08730

Predicted

Affinity Capture-MS

FSW = 0.2016

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.3488

Unknown

A37 PROTEIN HETERODIMERIZATION
AT1G52300

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.4289

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.3648

Unknown

PSF2
AT5G47880

Predicted

Affinity Capture-MS

FSW = 0.4105

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.1500

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.4561

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.4390

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G33090

Predicted

Affinity Capture-MS

FSW = 0.1641

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G51770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5140

Unknown

UNKNOWN PROTEIN
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.4875

Unknown

CORNICHON FAMILY PROTEIN
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.4474

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.1397

Unknown

MO25 FAMILY PROTEIN
AT2G19910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3467

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.3210

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.4674

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.4876

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.4303

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.4807

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G21460

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.4918

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.1772

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.2295

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.3756

Unknown

ATATG18A
AT4G16265

Predicted

Affinity Capture-RNA

FSW = 0.0365

Unknown

NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G17770

Predicted

Affinity Capture-MS

FSW = 0.4631

Unknown

ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G19645

Predicted

Affinity Capture-MS

FSW = 0.1474

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.2864

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G35620

Predicted

Affinity Capture-MS

FSW = 0.2642

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.4321

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.4446

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.1425

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19660

Predicted

Affinity Capture-MS

FSW = 0.5334

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.3821

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.3650

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46150

Predicted

Affinity Capture-MS

FSW = 0.1711

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.3188

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.1658

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454