Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72480 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN Golgi apparatus EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G010701) Has 422 Blast hits to 420 proteins in 121 species Archae - 0 Bacteria - 0 Metazoa - 208 Fungi - 101 Plants - 83 Viruses - 0 Other Eukaryotes - 30 (source NCBI BLink) )
77 Proteins interacs with AT1G72480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G13650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4404
| Class C:golgi | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4909
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.1306
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4310
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3115
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4511
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4801
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G04940 | PredictedAffinity Capture-RNA | FSW = 0.0246
| Unknown | SCRAMBLASE-RELATED |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.3934
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5325
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2482
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4557
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3003
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G15450 | PredictedAffinity Capture-RNA | FSW = 0.0288
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4959
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3703
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5377
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.2385
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.4702
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G15080 | Predictedtwo hybrid | FSW = 0.0182
| Unknown | LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3133
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0382
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4310
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.4750
| Unknown | ZINC ION BINDING |
AT1G09640 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.4531
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4321
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G54840 | Predictedinterologs mapping | FSW = 0.0108
| Unknown | SGP1 GTP BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.4843
| Unknown | HTA6 DNA BINDING |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.3800
| Unknown | HISTONE H2B PUTATIVE |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1929
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G07140 | Predictedtwo hybrid | FSW = 0.0026
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.2016
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3488
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4289
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3648
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4105
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1500
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4561
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4390
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.1641
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5140
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.4875
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4474
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.1397
| Unknown | MO25 FAMILY PROTEIN |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3467
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3210
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4674
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.4876
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4303
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.4807
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G21460 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4918
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.1772
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.2295
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.3756
| Unknown | ATATG18A |
AT4G16265 | PredictedAffinity Capture-RNA | FSW = 0.0365
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4631
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.1474
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.2864
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.2642
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4321
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4446
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1425
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.5334
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3821
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3650
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.1711
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3188
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1658
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454