Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25860 - ( ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) oxysterol binding )
73 Proteins interacs with AT4G25860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5348
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.1601
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.5578
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1086
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5070
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5196
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.1806
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.2527
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5450
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4608
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4167
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07890 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5640
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4101
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3926
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4866
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5302
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.2338
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.3024
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0883
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT4G21450 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN |
AT5G47180 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6086
| Unknown | ZINC ION BINDING |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4681
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4715
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5174
| Unknown | HTA6 DNA BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.3383
| Unknown | HISTONE H2B PUTATIVE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.2129
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1497
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3606
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4300
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5139
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3419
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4718
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0040
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4882
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G15440 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0083
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.5070
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2867
| Unknown | UNKNOWN PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0859
| Unknown | UNKNOWN PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5708
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5312
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.2490
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5412
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4493
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5139
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.2731
| Unknown | MO25 FAMILY PROTEIN |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.5414
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.3763
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1982
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3628
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.3783
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.3509
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5659
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2805
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5038
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4444
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4820
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G45590 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.2273
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5098
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.2972
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.3981
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.2860
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.5040
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4114
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3342
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27060 | PredictedGene fusion method | FSW = 0.0132
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454