Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58660 - ( 60S ribosomal protein-related )
92 Proteins interacs with AT3G58660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.2496
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.2406
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.2163
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G22440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3453
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G01610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2606
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G39740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4163
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2885
| Class C:nucleus | RNA BINDING |
AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.1063
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2531
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5464
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2365
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0832
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4033
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G19120 | PredictedAffinity Capture-MS | FSW = 0.0075
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4467
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.1544
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1190
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.1475
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2891
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4381
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4596
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5544
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | Predictedinteraction predictionCo-expression | FSW = 0.3161
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.1617
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT2G34720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0393
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4079
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G51260 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0247
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1838
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.1931
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G35590 | PredictedAffinity Capture-Western | FSW = 0.0232
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.4046
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G06530 | PredictedAffinity Capture-MS | FSW = 0.1935
| Unknown | BINDING |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1143
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT3G53890 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G46430 | PredictedAffinity Capture-MS | FSW = 0.1263
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT1G70600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2406
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.1382
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G53750 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0040
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G74270 | PredictedAffinity Capture-MS | FSW = 0.1771
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.1306
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3819
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G47990 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0577
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT5G09500 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT1G10490 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1913
| Unknown | UNKNOWN PROTEIN |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6188
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4312
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G13060 | PredictedCo-purification | FSW = 0.0264
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5061
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.2272
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0582
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT4G36020 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.3197
| Unknown | SDA1 FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2521
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G52980 | PredictedAffinity Capture-MS | FSW = 0.3156
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G55150 | PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G56450 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0227
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G69070 | PredictedAffinity Capture-MS | FSW = 0.0828
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3948
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4506
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4519
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2728
| Unknown | BINDING |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.1250
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4958
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2251
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3321
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.2313
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G55170 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT3G55280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3896
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G60780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0793
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | F-BOX FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2185
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G39840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0366
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G12620 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4559
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4753
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4301
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G57160 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0618
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G61770 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3358
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT4G01560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3735
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3801
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4612
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G25730 | PredictedAffinity Capture-MS | FSW = 0.2344
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G31985 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.2848
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G06360 | PredictedAffinity Capture-MS | FSW = 0.2984
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2963
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G52820 | PredictedAffinity Capture-MS | FSW = 0.1275
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5235
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0084
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0823
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454