Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58660 - ( 60S ribosomal protein-related )

92 Proteins interacs with AT3G58660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2496

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.2406

Class C:

nucleus

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.2163

Class C:

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3453

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G01610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2606

Class C:

nucleus

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G39740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4163

Class C:

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2885

Class C:

nucleus

RNA BINDING
AT2G33370Predicted

Affinity Capture-MS

FSW = 0.1063

Class C:

nucleus

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G44860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2531

Class C:

nucleus

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5464

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2365

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0832

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4033

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G19120

Predicted

Affinity Capture-MS

FSW = 0.0075

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4467

Class C:

nucleus

BRIX DOMAIN-CONTAINING PROTEIN
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.1544

Class C:

nucleus

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1190

Class C:

nucleus

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.1475

Class C:

nucleus

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2891

Class C:

nucleus

RNA HELICASE PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4381

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4596

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5544

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G07050

Predicted

interaction prediction

Co-expression

FSW = 0.3161

Class C:

nucleus

GTP-BINDING FAMILY PROTEIN
AT2G37990

Predicted

Affinity Capture-MS

FSW = 0.1617

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT2G34720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0393

Class C:

nucleus

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4079

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G51260

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0247

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.1838

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.1931

Unknown

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G35590

Predicted

Affinity Capture-Western

FSW = 0.0232

Unknown

PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.4046

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530

Predicted

Affinity Capture-MS

FSW = 0.1935

Unknown

BINDING
AT1G67120Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1143

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT3G53890

Predicted

Affinity Capture-MS

FSW = 0.0053

Unknown

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.2722

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.1263

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G70600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2406

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810Predicted

Affinity Capture-MS

FSW = 0.1382

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT1G53750

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0040

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.1771

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT3G53430

Predicted

Affinity Capture-MS

FSW = 0.1306

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3819

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G47990

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0577

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G09500

Predicted

Affinity Capture-MS

FSW = 0.0635

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G10490

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1913

Unknown

UNKNOWN PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6188

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4312

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G13060

Predicted

Co-purification

FSW = 0.0264

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5061

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.2272

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT2G17870

Predicted

Affinity Capture-MS

FSW = 0.0582

Unknown

COLD-SHOCK DNA-BINDING FAMILY PROTEIN
AT4G36020

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G13160

Predicted

Affinity Capture-MS

FSW = 0.3197

Unknown

SDA1 FAMILY PROTEIN
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2521

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52980

Predicted

Affinity Capture-MS

FSW = 0.3156

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G55150

Predicted

Affinity Capture-MS

FSW = 0.0658

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G56450

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0227

Unknown

PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G69070

Predicted

Affinity Capture-MS

FSW = 0.0828

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G79150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3948

Unknown

BINDING
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4506

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4519

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G34357Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2728

Unknown

BINDING
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.1250

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4958

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2251

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3321

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.2313

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55170

Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT3G55280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3896

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G60780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0793

Unknown

HAP13 (HAPLESS 13) PROTEIN BINDING
AT1G67190

Predicted

Affinity Capture-MS

FSW = 0.0452

Unknown

F-BOX FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2185

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0366

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G12620

Predicted

Affinity Capture-MS

FSW = 0.0396

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT5G05450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4559

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4753

Unknown

PESCADILLO-RELATED
AT5G20600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4301

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G57160

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0618

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61770

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3358

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT4G01560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3735

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G15770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3801

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4612

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G25730

Predicted

Affinity Capture-MS

FSW = 0.2344

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G31985

Predicted

Affinity Capture-MS

FSW = 0.0050

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.2848

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G06360

Predicted

Affinity Capture-MS

FSW = 0.2984

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2963

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G52820

Predicted

Affinity Capture-MS

FSW = 0.1275

Unknown

WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5235

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G11800

Predicted

two hybrid

FSW = 0.0084

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G67380

Predicted

interaction prediction

FSW = 0.0823

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454