Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15550 - ( transducin family protein / WD-40 repeat family protein )
73 Proteins interacs with AT5G15550| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25520
   | PredictedAffinity Capture-MS | FSW = 0.2653
| Class C:nucleus | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.1283
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G47610
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2158
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G49010
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0964
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G01610
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3902
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G39740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2883
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2367
| Class C:nucleus | RNA BINDING |
| AT2G44680
| Predictedtwo hybridtwo hybrid | FSW = 0.0244
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4271
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4221
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT2G44860
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2846
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3718
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4079
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT2G43810
| PredictedAffinity Capture-MS | FSW = 0.0057
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4723
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT5G54840
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Class C:nucleus | SGP1 GTP BINDING |
| AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.3654
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0160
| Class C:nucleus | SGP2 GTP BINDING |
| AT1G17590
| PredictedAffinity Capture-MS | FSW = 0.0328
| Class C:nucleus | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2260
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G18040
| Predictedbiochemical | FSW = 0.0030
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4872
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT5G55920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4646
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G07050
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3935
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT2G34720
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
| AT3G18600
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2677
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.0919
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0064
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G13580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2615
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT1G26160
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4011
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexinteraction predictionCo-expression | FSW = 0.4456
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G30290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0513
| Unknown | XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
| AT1G50920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4011
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G48900
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0334
| Unknown | SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 3 / SRP54 (SRP-54C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.2438
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G15310
| PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G22660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3660
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT5G47080
| Predictedtwo hybrid | FSW = 0.0164
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2572
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G79150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4656
| Unknown | BINDING |
| AT2G17790
| PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | VPS35A (VPS35 HOMOLOG A) |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5244
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4587
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4117
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2663
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5730
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4446
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5026
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT5G05450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4949
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4798
| Unknown | PESCADILLO-RELATED |
| AT1G54560 | Predictedbiochemical | FSW = 0.0104
| Unknown | XIE MOTOR/ PROTEIN BINDING |
| AT2G39840
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0300
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT4G26270
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0096
| Unknown | PFK3 (PHOSPHOFRUCTOKINASE 3) 6-PHOSPHOFRUCTOKINASE |
| AT5G20600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3749
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G22480
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
| AT5G46840
| PredictedAffinity Capture-MS | FSW = 0.3338
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G57160
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1294
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
| AT5G61770
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3328
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT5G65900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3766
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G67380
| PredictedAffinity Capture-MS | FSW = 0.1073
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G19510
| PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
| AT1G75850
| PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | VPS35B (VPS35 HOMOLOG B) |
| AT2G29400
| PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G77050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2593
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G48960
| PredictedAffinity Capture-MS | FSW = 0.0605
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5018
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G16520
| Predictedtwo hybrid | FSW = 0.0351
| Unknown | UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY PROTEIN |
| AT3G51310
| Predictedinteraction prediction | FSW = 0.0547
| Unknown | VPS35C (VPS35 HOMOLOG C) |
| AT5G25550
| PredictedGene fusion method | FSW = 0.0425
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
| AT5G59210
| PredictedGene fusion method | FSW = 0.0334
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
| AT2G19780
| PredictedGene fusion method | FSW = 0.0127
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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