Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23620 - ( brix domain-containing protein )

74 Proteins interacs with AT3G23620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25520

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2441

Class C:

nucleus

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1664

Class C:

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-expression

FSW = 0.1701

Class C:

nucleus

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-Western

FSW = 0.0718

Class C:

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G43170

Predicted

Affinity Capture-MS

FSW = 0.2559

Class C:

nucleus

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.2553

Class C:

nucleus

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G01610

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3278

Class C:

nucleus

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2967

Class C:

nucleus

RNA BINDING
AT2G39460

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1608

Class C:

nucleus

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G39740

Predicted

Affinity Capture-MS

far western blotting

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.3538

Class C:

nucleus

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G44860

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3463

Class C:

nucleus

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4758

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.2294

Class C:

nucleus

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3812

Class C:

nucleus

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2239

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4467

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5748

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48240

Predicted

Affinity Capture-MS

FSW = 0.2259

Class C:

nucleus

UNKNOWN PROTEIN
AT5G54910

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0663

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5720

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G07050

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4821

Class C:

nucleus

GTP-BINDING FAMILY PROTEIN
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4467

Class C:

nucleus

60S RIBOSOMAL PROTEIN-RELATED
AT2G37990

Predicted

two hybrid

Affinity Capture-MS

far western blotting

Co-purification

Affinity Capture-Western

two hybrid

Affinity Capture-MS

co-fractionation

Co-fractionation

far western blotting

Co-expression

FSW = 0.4006

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT2G13370

Predicted

Affinity Capture-MS

FSW = 0.0101

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G18600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2203

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4632

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4723

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G18730Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

far western blotting

two hybrid

Co-purification

FSW = 0.1286

Unknown

RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2840

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3975

Unknown

RIBOSOMAL PROTEIN-RELATED
AT2G17265

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

HSK (HOMOSERINE KINASE) HOMOSERINE KINASE
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.1652

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.1102

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5153

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5299

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.4633

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3198

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G26751

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G13160

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3378

Unknown

SDA1 FAMILY PROTEIN
AT1G52980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3333

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G79150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4802

Unknown

BINDING
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5986

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4242

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.2945

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G59760

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0923

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT2G36930

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2282

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G39340

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

SAC3/GANP FAMILY PROTEIN
AT2G40700

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1307

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT2G44150

Predicted

Affinity Capture-MS

FSW = 0.0040

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G45330

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Unknown

EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS
AT3G01160

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0702

Unknown

UNKNOWN PROTEIN
AT3G49470

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT4G12620

Predicted

Affinity Capture-MS

FSW = 0.0287

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G30870

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G06360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3937

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5029

Unknown

PESCADILLO-RELATED
AT5G20600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4266

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G57160

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1094

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G61770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2995

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT3G55280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2847

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G15770

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4561

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4979

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G25730

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1961

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G34910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2841

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G05450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5548

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4434

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G33390

Predicted

Affinity Capture-MS

FSW = 0.0539

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT1G33040

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0089

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G77050Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2318

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G71280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1501

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G52930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4571

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT1G29965

Predicted

Affinity Capture-MS

FSW = 0.1818

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT5G39770

Predicted

interaction prediction

FSW = 0.0403

Unknown

DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G71370

Predicted

interaction prediction

FSW = 0.1270

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454