Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23620 - ( brix domain-containing protein )
74 Proteins interacs with AT3G23620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2441
| Class C:nucleus | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1664
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationCo-expression | FSW = 0.1701
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09200 | PredictedAffinity Capture-Western | FSW = 0.0718
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.2559
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.2553
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G01610 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3278
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2967
| Class C:nucleus | RNA BINDING |
AT2G39460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1608
| Class C:nucleus | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G39740 | PredictedAffinity Capture-MSfar western blottingAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.3538
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G44860 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3463
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4758
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.2294
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3812
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2239
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4467
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5748
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.2259
| Class C:nucleus | UNKNOWN PROTEIN |
AT5G54910 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0663
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5720
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4821
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4467
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
AT2G37990 | Predictedtwo hybridAffinity Capture-MSfar western blottingCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-MSco-fractionationCo-fractionationfar western blottingCo-expression | FSW = 0.4006
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT2G13370 | PredictedAffinity Capture-MS | FSW = 0.0101
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G18600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2203
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4632
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4723
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18730 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-Westernfar western blottingtwo hybridCo-purification | FSW = 0.1286
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2840
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3975
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT2G17265 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | HSK (HOMOSERINE KINASE) HOMOSERINE KINASE |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.1652
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.1102
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5153
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5299
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4633
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3198
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G26751 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3378
| Unknown | SDA1 FAMILY PROTEIN |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3333
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4802
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5986
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4242
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.2945
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G59760 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0923
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2282
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G39340 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT2G40700 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1307
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
AT2G44150 | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT2G45330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS |
AT3G01160 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0702
| Unknown | UNKNOWN PROTEIN |
AT3G49470 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) |
AT4G12620 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G30870 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3937
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5029
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4266
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G57160 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1094
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G61770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2995
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT3G55280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2847
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4561
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4979
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G25730 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1961
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G34910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2841
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5548
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G65900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4434
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G33390 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G33040 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0089
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2318
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G71280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1501
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G52930 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4571
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.1818
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT5G39770 | Predictedinteraction prediction | FSW = 0.0403
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT1G71370 | Predictedinteraction prediction | FSW = 0.1270
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454