Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13160 - ( SDA1 family protein )
48 Proteins interacs with AT1G13160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1759
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G47610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1607
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1981
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.1717
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT1G18540 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0100
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.1938
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3750
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1967
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.2154
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G39460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1693
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37190 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1875
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT3G18190 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0192
| Unknown | CHAPERONIN PUTATIVE |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2351
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT4G26110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.0250
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0257
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.1182
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT2G40360 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1860
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G44860 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2037
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2765
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4139
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.3197
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3533
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3378
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4276
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G71270 | Predictedinteraction predictiontwo hybrid | FSW = 0.0051
| Unknown | POK (POKY POLLEN TUBE) |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3395
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT2G43460 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0639
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G61580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2383
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4026
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G60780 | PredictedAffinity Capture-MS | FSW = 0.0956
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4031
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3740
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3640
| Unknown | PESCADILLO-RELATED |
AT5G52820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2972
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.2118
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT2G27200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1833
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G40430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1189
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G03960 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0216
| Unknown | CHAPERONIN PUTATIVE |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.2042
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.1990
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G08410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2361
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0294
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.1189
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0745
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.0897
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454