Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G52820 - ( WD-40 repeat family protein / notchless protein putative )

36 Proteins interacs with AT5G52820
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G06380

Predicted

Affinity Capture-MS

FSW = 0.1200

Unknown

RIBOSOMAL PROTEIN-RELATED
AT1G17745

Predicted

two hybrid

FSW = 0.0170

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G46290

Predicted

Gene fusion method

FSW = 0.0473

Unknown

KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) CATALYTIC/ FATTY-ACID SYNTHASE/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS
AT1G67120Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1850

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT1G79450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0121

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0080

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G20510

Predicted

Gene fusion method

FSW = 0.0450

Unknown

OPCL1 (OPC-80 COA LIGASE1) 4-COUMARATE-COA LIGASE
AT2G45490

Predicted

biochemical

FSW = 0.0082

Unknown

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT2G44860

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1649

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT1G10300Predicted

Affinity Capture-MS

FSW = 0.2479

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.1275

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1597

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G07050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2261

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0753

Unknown

RNA HELICASE PUTATIVE
AT4G32980

Predicted

Gene fusion method

FSW = 0.0275

Unknown

ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT3G08730

Predicted

two hybrid

FSW = 0.0085

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1714

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G13160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2972

Unknown

SDA1 FAMILY PROTEIN
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.1373

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2663

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G62880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0231

Unknown

CORNICHON FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1861

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G06150

Predicted

Reconstituted Complex

FSW = 0.0035

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2745

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G37850

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE
AT2G27200

Predicted

Affinity Capture-MS

FSW = 0.1114

Unknown

GTP-BINDING FAMILY PROTEIN
AT4G02400

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0563

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT1G08410

Predicted

Affinity Capture-MS

FSW = 0.0985

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G21750

Predicted

Gene fusion method

FSW = 0.0224

Unknown

UGT71B1 (UDP-GLUCOSYL TRANSFERASE 71B1) UDP-GLYCOSYLTRANSFERASE/ QUERCETIN 3-O-GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT4G29220

Predicted

Gene fusion method

FSW = 0.0239

Unknown

PFK1 (PHOSPHOFRUCTOKINASE 1) 6-PHOSPHOFRUCTOKINASE
AT3G60050

Predicted

Gene fusion method

FSW = 0.1555

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G23700

Predicted

Gene fusion method

FSW = 0.0463

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G18950

Predicted

Gene fusion method

FSW = 0.0463

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G02850

Predicted

Gene fusion method

FSW = 0.0087

Unknown

BGLU11 (BETA GLUCOSIDASE 11) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454