Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G52820 - ( WD-40 repeat family protein / notchless protein putative )
36 Proteins interacs with AT5G52820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT1G17745 | Predictedtwo hybrid | FSW = 0.0170
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G46290 | PredictedGene fusion method | FSW = 0.0473
| Unknown | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) CATALYTIC/ FATTY-ACID SYNTHASE/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G67120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1850
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT1G79450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0121
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G20510 | PredictedGene fusion method | FSW = 0.0450
| Unknown | OPCL1 (OPC-80 COA LIGASE1) 4-COUMARATE-COA LIGASE |
AT2G45490 | Predictedbiochemical | FSW = 0.0082
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT2G44860 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1649
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.2479
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.1275
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1597
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2261
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | RNA HELICASE PUTATIVE |
AT4G32980 | PredictedGene fusion method | FSW = 0.0275
| Unknown | ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1714
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2972
| Unknown | SDA1 FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.1373
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G52980 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2663
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G62880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0231
| Unknown | CORNICHON FAMILY PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1861
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT5G06150 | PredictedReconstituted Complex | FSW = 0.0035
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2745
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT2G27200 | PredictedAffinity Capture-MS | FSW = 0.1114
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT4G02400 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0563
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK) |
AT1G08410 | PredictedAffinity Capture-MS | FSW = 0.0985
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G21750 | PredictedGene fusion method | FSW = 0.0224
| Unknown | UGT71B1 (UDP-GLUCOSYL TRANSFERASE 71B1) UDP-GLYCOSYLTRANSFERASE/ QUERCETIN 3-O-GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G29220 | PredictedGene fusion method | FSW = 0.0239
| Unknown | PFK1 (PHOSPHOFRUCTOKINASE 1) 6-PHOSPHOFRUCTOKINASE |
AT3G60050 | PredictedGene fusion method | FSW = 0.1555
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G23700 | PredictedGene fusion method | FSW = 0.0463
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G18950 | PredictedGene fusion method | FSW = 0.0463
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G02850 | PredictedGene fusion method | FSW = 0.0087
| Unknown | BGLU11 (BETA GLUCOSIDASE 11) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454