Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26600 - ( nucleolar protein putative )
130 Proteins interacs with AT4G26600| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25520
   | PredictedAffinity Capture-MS | FSW = 0.1658
| Class C:nucleus | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G49910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1709
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.0443
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.1195
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G43170
| PredictedAffinity Capture-MS | FSW = 0.1175
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G03920
| PredictedAffinity Capture-MS | FSW = 0.0164
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT5G65430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0487
| Class C:nucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G20010
| PredictedAffinity Capture-MS | FSW = 0.1980
| Class C:nucleus | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G72710
| PredictedReconstituted Complex | FSW = 0.0269
| Class C:nucleus | CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1440
| Class C:nucleus | RNA BINDING |
| AT2G30260
| PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:nucleus | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1289
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSCo-expression | FSW = 0.0840
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G74060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1557
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2867
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT1G65030
| PredictedAffinity Capture-MS | FSW = 0.0789
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2202
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2108
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2239
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G07050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2405
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT3G16810
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2372
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT1G56110
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0206
| Class C:nucleus | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT3G54350
| Predictedtwo hybridReconstituted Complexco-fractionationCo-fractionation | FSW = 0.0084
| Class C:nucleus | EMB1967 (EMBRYO DEFECTIVE 1967) |
| AT2G34210
| PredictedAffinity Capture-MS | FSW = 0.0439
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT2G37990
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0978
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT1G11100
| PredictedAffinity Capture-MS | FSW = 0.0316
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
| AT3G18600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1915
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0337
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2260
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G36160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2636
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.0921
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT3G12580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2069
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G20450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0910
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT1G54270
| PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G75530
| Predictedin vitrotwo hybrid | FSW = 0.0201
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
| AT1G18540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2802
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT1G21640
| PredictedAffinity Capture-MS | FSW = 0.2082
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
| AT3G19160
| PredictedAffinity Capture-MS | FSW = 0.1660
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
| AT1G80030
| PredictedAffinity Capture-MS | FSW = 0.0745
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G51040
| PredictedAffinity Capture-MS | FSW = 0.1883
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT5G49030
| PredictedSynthetic Lethality | FSW = 0.0316
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2970
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT5G43940
| PredictedAffinity Capture-MS | FSW = 0.0614
| Unknown | HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE |
| AT2G14120
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0773
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT3G61430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2994
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0088
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT1G55690
| PredictedAffinity Capture-MS | FSW = 0.1243
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT1G63290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3022
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
| AT1G11250
| PredictedAffinity Capture-MS | FSW = 0.2195
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G20760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2928
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT5G12350
| PredictedAffinity Capture-MS | FSW = 0.0297
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
| AT4G04720
| PredictedSynthetic Lethality | FSW = 0.0351
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G24400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1822
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT4G35310
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2731
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2028
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2612
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT1G71270
| Predictedtwo hybridtwo hybrid | FSW = 0.0019
| Unknown | POK (POKY POLLEN TUBE) |
| AT2G33110
| PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723) |
| AT4G35640
| Predictedtwo hybridtwo hybridAffinity Capture-MS | FSW = 0.0507
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.1404
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G52580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1161
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT3G12530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1952
| Unknown | PSF2 |
| AT1G09270
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0196
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | UNKNOWN PROTEIN |
| AT1G54290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1944
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.1792
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT2G03040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2629
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G16090
| PredictedAffinity Capture-MS | FSW = 0.2595
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT2G16740
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2802
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G45080
| PredictedAffinity Capture-Western | FSW = 0.0747
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT3G02000
| PredictedAffinity Capture-MS | FSW = 0.0525
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G05960
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1233
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.0746
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.0763
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G21460
| PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| AT3G23570
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1808
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G50880
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0263
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1360
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G59790
| PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | ATATG18A |
| AT4G12440
| PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G43360
| PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G44065
| PredictedAffinity Capture-MS | FSW = 0.0302
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
| AT3G59410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0791
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G04700
| PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G20280
| PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT4G29910
| PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT4G36070
| PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G36800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2561
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT4G39330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1916
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G06420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.3971
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2815
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2952
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G15070
| PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G16040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0336
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.1979
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G17000
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1939
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G24410
| PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
| AT5G37850
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2387
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
| AT5G02530
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0669
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1656
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT2G40700
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0788
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
| AT2G18220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2937
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT1G79150
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2109
| Unknown | BINDING |
| AT5G57160
| PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
| AT4G30870
| PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT5G49930
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G14520
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2266
| Unknown | PESCADILLO-RELATED |
| AT5G06360
| PredictedAffinity Capture-MS | FSW = 0.0966
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT1G20860
| PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
| AT1G52930
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2981
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1085
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT5G61770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1541
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT1G77050 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1423
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1808
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1453
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1136
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G71280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2112
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1956
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT1G06720
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0198
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2285
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G46840
| PredictedSynthetic Lethality | FSW = 0.1192
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G49760
| PredictedGene fusion method | FSW = 0.0190
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT2G25440
| PredictedGene fusion method | FSW = 0.0162
| Unknown | ATRLP20 (RECEPTOR LIKE PROTEIN 20) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
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