Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49930 - ( emb1441 (embryo defective 1441) nucleic acid binding / zinc ion binding )
26 Proteins interacs with AT5G49930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT3G28715 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerninterologs mappingCo-purification | FSW = 0.2588
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT4G29210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinterologs mapping | FSW = 0.4957
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT3G20550 | PredictedSynthetic Lethality | FSW = 0.0686
| Unknown | DDL (DAWDLE) |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.1139
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G25910 | PredictedPhenotypic Enhancement | FSW = 0.2727
| Unknown | NFU3 STRUCTURAL MOLECULE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0043
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G55690 | PredictedAffinity Capture-Western | FSW = 0.2308
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G35690 | Predictedtwo hybridtwo hybrid | FSW = 0.0237
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G18600 | PredictedAffinity Capture-MS | FSW = 0.1071
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G20696 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.1098
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G03080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Western | FSW = 0.4669
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT4G00800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0988
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G07950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3861
| Unknown | UNKNOWN PROTEIN |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.0697
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0481
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G13330 | PredictedAffinity Capture-Western | FSW = 0.1407
| Unknown | BINDING |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.0563
| Unknown | UNKNOWN PROTEIN |
AT5G43340 | PredictedAffinity Capture-Western | FSW = 0.2845
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.0604
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454