Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25910 - ( NFU3 structural molecule )
23 Proteins interacs with AT4G25910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedReconstituted Complex | FSW = 0.0753
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1226
| Class C:plastid | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0632
| Class C:plastid | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G23940 | PredictedAffinity Capture-MS | FSW = 0.1054
| Class C:plastid | DEHYDRATASE FAMILY |
AT4G29210 | PredictedPhenotypic Enhancement | FSW = 0.3729
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT3G21540 | PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18600 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.0964
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G49520 | PredictedAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-WesternPhenotypic EnhancementReconstituted Complex | FSW = 0.1079
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G44190 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.2529
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0704
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.0436
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0811
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0754
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0808
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.1280
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT3G03080 | PredictedPhenotypic Enhancement | FSW = 0.3806
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.0889
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1194
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0733
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0944
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G49930 | PredictedPhenotypic Enhancement | FSW = 0.2727
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.1013
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G43340 | PredictedAffinity Capture-MS | FSW = 0.3546
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454