Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21540 - ( transducin family protein / WD-40 repeat family protein )
60 Proteins interacs with AT3G21540| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G20290
   | PredictedAffinity Capture-MS | FSW = 0.1714
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.2810
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.1990
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G56990
| PredictedAffinity Capture-MS | FSW = 0.4130
| Class C:nucleus | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
| AT3G13445
| PredictedReconstituted ComplexReconstituted ComplexSynthetic LethalitySynthetic Rescue | FSW = 0.0455
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT4G19610 | PredictedAffinity Capture-MS | FSW = 0.0537
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G57000
| PredictedAffinity Capture-MS | FSW = 0.6055
| Class C:nucleus | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3925
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2486
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.3732
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G18600
| PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.1461
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G66540
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4636
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT4G05410
| PredictedAffinity Capture-MS | FSW = 0.4504
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G09590
| Predictedinterologs mapping | FSW = 0.0332
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G33140
| Predictedinterologs mapping | FSW = 0.0764
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G28715
| PredictedCo-purification | FSW = 0.0442
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT5G01820
| PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G25910
| PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | NFU3 STRUCTURAL MOLECULE |
| AT5G49030
| PredictedGene fusion method | FSW = 0.0063
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.3976
| Unknown | BINDING |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT1G55690
| PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1067
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G03540
| PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.1879
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
| AT2G39480
| PredictedReconstituted ComplexAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0793
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G28670
| Predictedtwo hybrid | FSW = 0.0148
| Unknown | OXIDOREDUCTASE/ ZINC ION BINDING |
| AT1G01020
| PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic Rescue | FSW = 0.1331
| Unknown | ARV1 |
| AT2G47990
| PredictedAffinity Capture-MS | FSW = 0.4160
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.3190
| Unknown | UNKNOWN PROTEIN |
| AT1G06720
| PredictedAffinity Capture-MS | FSW = 0.4918
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT1G12130
| PredictedAffinity Capture-Western | FSW = 0.0742
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT1G34340
| PredictedAffinity Capture-Western | FSW = 0.0299
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
| AT1G55255 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0095
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
| AT2G17250
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4918
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.2621
| Unknown | BINDING |
| AT2G47420
| PredictedAffinity Capture-MS | FSW = 0.3088
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
| AT3G13230
| PredictedAffinity Capture-MS | FSW = 0.3022
| Unknown | RNA BINDING |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2424
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G20696
| PredictedCo-purification | FSW = 0.0406
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2986
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G49520
| PredictedCo-purification | FSW = 0.0612
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT1G69070
| PredictedAffinity Capture-MS | FSW = 0.4019
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT3G09720
| PredictedAffinity Capture-MS | FSW = 0.1817
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G10530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4347
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G45630
| PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0885
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G56510
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2390
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT4G02120
| PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.1068
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT4G04940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5095
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G07410
| PredictedAffinity Capture-MS | FSW = 0.5733
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G26510
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1088
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
| AT4G28200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5371
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.4946
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.4916
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G08420
| PredictedAffinity Capture-MS | FSW = 0.3343
| Unknown | RNA BINDING |
| AT5G14050
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2003
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G15750
| PredictedAffinity Capture-MS | FSW = 0.5495
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2851
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G24840
| PredictedAffinity Capture-Western | FSW = 0.0302
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G43340
| PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted Complexinterologs mappingCo-purificationAffinity Capture-MS | FSW = 0.3022
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G07950
| PredictedAffinity Capture-Western | FSW = 0.1427
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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