Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45080 - ( cycp31 (cyclin p31) cyclin-dependent protein kinase )

21 Proteins interacs with AT2G45080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

Reconstituted Complex

FSW = 0.0108

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.2211

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2778

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT2G39290

Predicted

Affinity Capture-MS

FSW = 0.0403

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT4G23430

Predicted

Affinity Capture-MS

FSW = 0.2722

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.2964

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT4G26600

Predicted

Affinity Capture-Western

FSW = 0.0747

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT4G13980

Predicted

two hybrid

FSW = 0.0123

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.2512

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT3G16050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2077

Unknown

A37 PROTEIN HETERODIMERIZATION
AT2G01770

Predicted

Affinity Capture-MS

FSW = 0.4006

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G16740

Predicted

Affinity Capture-Western

FSW = 0.0806

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G19910

Predicted

Affinity Capture-MS

FSW = 0.2512

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G43360

Predicted

Affinity Capture-MS

FSW = 0.3057

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.2243

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G35620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2770

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06150

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0306

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G19150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2817

Unknown

CARBOHYDRATE KINASE FAMILY
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.1967

Unknown

LPAT5 ACYLTRANSFERASE
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.3327

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT5G20060

Predicted

Affinity Capture-MS

FSW = 0.3742

Unknown

PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454