Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43940 - ( HOT5 (sensitive to hot temperatures 5) S-(hydroxymethyl)glutathione dehydrogenase/ S-nitrosoglutathione reductase )

21 Proteins interacs with AT5G43940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G77120

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6080

Class C:

plasma membrane

ADH1 (ALCOHOL DEHYDROGENASE 1) ALCOHOL DEHYDROGENASE
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0886

Class C:

plasma membrane

RNA BINDING
AT1G17745

Predicted

two hybrid

interaction prediction

FSW = 0.0128

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT4G36960

Predicted

Gene fusion method

FSW = 0.0803

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0456

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0614

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G55920

Predicted

Affinity Capture-MS

FSW = 0.1053

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G18600

Predicted

Affinity Capture-MS

FSW = 0.0635

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G79150

Predicted

Affinity Capture-MS

FSW = 0.0902

Unknown

BINDING
AT2G18220

Predicted

Affinity Capture-MS

FSW = 0.1259

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.0790

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G39520

Predicted

Affinity Capture-MS

FSW = 0.0392

Unknown

GTP-BINDING PROTEIN PUTATIVE
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.0837

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G32780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5246

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT1G64710

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5246

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT1G22440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5246

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT4G22110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5095

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT1G22430

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5246

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT5G24760

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5246

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT5G42250

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5095

Unknown

ALCOHOL DEHYDROGENASE PUTATIVE
AT5G63620

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5952

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454