Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G16090 - ( zinc finger protein-related )
47 Proteins interacs with AT2G16090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.3213
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5461
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2949
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.2577
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5122
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.5845
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.1916
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.4596
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G76140 | Predictedtwo hybrid | FSW = 0.0640
| Unknown | SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.5505
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4920
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.3866
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.2577
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.6237
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1987
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.5020
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.5674
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G41620 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.2768
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.2595
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G66540 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT5G35530 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT1G50500 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4272
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.1373
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G59470 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT2G31270 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2748
| Unknown | PSF2 |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.3832
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2866
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.2854
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4286
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2414
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.5305
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.2915
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.6794
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2268
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4845
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.3901
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.6703
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4177
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G04240 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G18030 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | PEPTIDE METHIONINE SULFOXIDE REDUCTASE FAMILY PROTEIN |
AT5G57020 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | NMT1 (MYRISTOYL-COAPROTEIN N-MYRISTOYLTRANSFERASE) GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE/ MYRISTOYLTRANSFERASE |
AT3G27710 | PredictedPhylogenetic profile method | FSW = 0.0640
| Unknown | ZINC FINGER PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454