Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09740 - ( SYP71 (SYNTAXIN OF PLANTS 71) protein transporter )
28 Proteins interacs with AT3G09740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1186
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G37270 | Predictedinterologs mapping | FSW = 0.0080
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1274
| Class C:plasma membrane | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.2677
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1496
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3380
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1902
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3794
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2488
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.3440
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT4G13980 | Predictedbiochemical | FSW = 0.0164
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1331
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3163
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.1482
| Unknown | BINDING |
AT2G43460 | Predictedinterologs mapping | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.3866
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.4241
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G08260 | Predictedinterologs mapping | FSW = 0.0242
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.2507
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2098
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0243
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | UNKNOWN PROTEIN |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2735
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT4G11330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2639
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.3808
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2400
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4447
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2892
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454