Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09500 - ( 40S ribosomal protein S15 (RPS15C) )
40 Proteins interacs with AT5G09500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.5070
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT5G09510 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1915
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15D) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.3725
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.3601
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.3428
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.4450
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.2411
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.3918
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.4875
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3301
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G04270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2488
| Unknown | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G48830 | PredictedAffinity Capture-MS | FSW = 0.5588
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.4943
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3784
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.3678
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.4453
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G46430 | PredictedAffinity Capture-MS | FSW = 0.6312
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.0842
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.5709
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.5285
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.3111
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.3992
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.3728
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G06700 | PredictedAffinity Capture-MS | FSW = 0.5232
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.4058
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.3750
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G41840 | PredictedAffinity Capture-MS | FSW = 0.2588
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
AT5G09490 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1439
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15B) |
AT5G63070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2553
| Unknown | 40S RIBOSOMAL PROTEIN S15 PUTATIVE |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.1692
| Unknown | GLYCINE-RICH PROTEIN |
AT5G02960 | PredictedAffinity Capture-MS | FSW = 0.3723
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23B) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.3236
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.4456
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT5G43640 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1915
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15E) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.3977
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.1470
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.3230
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.4792
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454