Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74270 - ( 60S ribosomal protein L35a (RPL35aC) )
22 Proteins interacs with AT1G74270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.3076
| Class C:plasma membrane | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.2520
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.2135
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.2917
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.1376
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.2303
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2822
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G41880 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3894
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L35A (RPL35AB) |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.2686
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.2368
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G63110 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.0885
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.1936
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.1771
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55750 | PredictedPhylogenetic profile method | FSW = 0.1580
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AD) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.1914
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0458
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.1811
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.2189
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.1843
| Unknown | PESCADILLO-RELATED |
AT1G07070 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1623
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454