Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11450 - ( DNAJ heat shock N-terminal domain-containing protein / cell division protein-related )

35 Proteins interacs with AT3G11450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0674

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G31610

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT1G43170

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0691

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60770

Predicted

Affinity Capture-MS

FSW = 0.0516

Unknown

40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT1G18080

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0670

Unknown

ATARCA NUCLEOTIDE BINDING
AT2G39460

Predicted

Affinity Capture-MS

FSW = 0.0571

Unknown

RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.1179

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.1242

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT3G53890

Predicted

Affinity Capture-MS

FSW = 0.0280

Unknown

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT5G60790

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1087

Unknown

ATGCN1 TRANSPORTER
AT1G30230

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

ELONGATION FACTOR 1-BETA / EF-1-BETA
AT3G53430

Predicted

Affinity Capture-MS

FSW = 0.1232

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.0715

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT3G18130

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0677

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G70320

Predicted

Synthetic Rescue

Affinity Capture-MS

FSW = 0.0201

Unknown

UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE
AT2G22290

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G55860

Predicted

Affinity Capture-MS

Synthetic Rescue

FSW = 0.0271

Unknown

UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT2G36200

Predicted

Synthetic Lethality

FSW = 0.0132

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.1059

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.0529

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G74250

Predicted

interologs mapping

FSW = 0.0088

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G45000

Predicted

Phenotypic Suppression

FSW = 0.0117

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT3G06483

Predicted

biochemical

FSW = 0.0041

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G13330Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

BINDING
AT5G10260

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G17930

Predicted

Affinity Capture-MS

FSW = 0.0275

Unknown

BINDING / PROTEIN BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.1073

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.0817

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60240

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0632

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G54510

Predicted

Affinity Capture-MS

FSW = 0.0839

Unknown

ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.0169

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G20860

Predicted

interaction prediction

FSW = 0.0552

Unknown

ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454