Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05210 - ( nucleolar matrix protein-related )

15 Proteins interacs with AT5G05210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.1123

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1157

Class C:

nucleus

RNA HELICASE PUTATIVE
AT4G34700

Predicted

two hybrid

FSW = 0.0889

Unknown

COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN
AT2G09990

Predicted

two hybrid

FSW = 0.1014

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0231

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0066

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G60360

Predicted

two hybrid

FSW = 0.0256

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT3G22660

Predicted

two hybrid

FSW = 0.1671

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G18380

Predicted

two hybrid

FSW = 0.0821

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT4G37280

Predicted

two hybrid

two hybrid

FSW = 0.0404

Unknown

MRG FAMILY PROTEIN
AT2G44200

Predicted

two hybrid

two hybrid

FSW = 0.0342

Unknown

UNKNOWN PROTEIN
AT4G34910

Predicted

two hybrid

FSW = 0.1217

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G61770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1226

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G46840

Predicted

two hybrid

FSW = 0.0542

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454