Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19385 - ( zinc ion binding )
26 Proteins interacs with AT2G19385Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0512
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G09590 | PredictedAffinity Capture-MS | FSW = 0.0923
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L21 (RPL21A) |
AT5G62190 | PredictedAffinity Capture-MS | FSW = 0.0315
| Class C:nucleus | PRH75 ATP-DEPENDENT HELICASE/ DEAD/H-BOX RNA HELICASE BINDING |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G14600 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT3G57940 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | UNKNOWN PROTEIN |
AT2G43640 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | SIGNAL RECOGNITION PARTICLE 14 KDA FAMILY PROTEIN / SRP14 FAMILY PROTEIN |
AT3G22660 | PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | UNKNOWN PROTEIN |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.1012
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0694
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G42440 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G52930 | PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G52980 | PredictedAffinity Capture-MS | FSW = 0.1011
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G57860 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | 60S RIBOSOMAL PROTEIN L21 |
AT1G58050 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT2G46280 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G46290 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
AT3G15460 | PredictedAffinity Capture-MS | FSW = 0.0749
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.0865
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.1306
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G49310 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G64420 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | DNA POLYMERASE V FAMILY |
AT5G67540 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454