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AT2G33340 - ( nucleotide binding / ubiquitin-protein ligase )

120 Proteins interacs with AT2G33340

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G18165	Experimental	FSW = 0.1201	Class B: unclear plastid nucleus Class D: nucleus (p = 0.78) cytosol (p = 0.67)	MOS4 (MODIFIER OF SNC14)
AT5G15200	Predicted Co-purification	FSW = 0.0970	Class C: plastid	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G09590	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.0275	Class C: plastid	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G20260	Predicted Gene fusion method	FSW = 0.0026	Class C: plastid	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G09990	Predicted Co-purification	FSW = 0.0804	Class C: plastid	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G09760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3597	Class C: plastid	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS two hybrid Co-purification Affinity Capture-Western far western blotting interaction prediction	FSW = 0.2908	Class C: plastid	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G64270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3117	Class C: plastid	SPLICING FACTOR PUTATIVE
AT3G54660	Predicted Gene fusion method	FSW = 0.0100	Class C: plastid	GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT3G18790	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Co-purification Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Synthetic Lethality interaction prediction	FSW = 0.1182	Class C: plastid	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT1G22170	Predicted Co-purification	FSW = 0.0189	Class C: plastid	PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interaction prediction	FSW = 0.3839	Class C: plastid	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G25660	Predicted Gene fusion method	FSW = 0.0366	Class C: plastid	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE
AT3G04770	Predicted Co-purification	FSW = 0.0156	Class C: plastid	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G35360	Predicted Gene fusion method	FSW = 0.0256	Class C: plastid	CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE
AT3G12580	Predicted Co-purification	FSW = 0.0081	Unknown	HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G37270	Predicted Co-purification	FSW = 0.0598	Unknown	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02840	Predicted Affinity Capture-MS Co-purification	FSW = 0.3512	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G34030	Predicted Co-purification	FSW = 0.0313	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G62870	Predicted synthetic growth defect	FSW = 0.0208	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G20960	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3847	Unknown	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G57870	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western two hybrid co-fractionation Co-fractionation Affinity Capture-MS	FSW = 0.0567	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT3G58510	Predicted Co-purification	FSW = 0.0391	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G60390	Predicted Co-purification	FSW = 0.0031	Unknown	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G11510	Predicted Co-purification	FSW = 0.0795	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT4G00100	Predicted Co-purification	FSW = 0.0431	Unknown	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Co-purification	FSW = 0.0347	Unknown	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G02600	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE
AT5G47510	Predicted Phenotypic Enhancement	FSW = 0.0078	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G62300	Predicted Co-purification	FSW = 0.0388	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT3G53870	Predicted Co-purification	FSW = 0.0346	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G15930	Predicted Co-purification	FSW = 0.0323	Unknown	40S RIBOSOMAL PROTEIN S12 (RPS12A)
AT1G80050	Predicted Synthetic Lethality	FSW = 0.0069	Unknown	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G20480	Predicted Gene fusion method	FSW = 0.0081	Unknown	4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT2G30260	Predicted Affinity Capture-MS Co-purification	FSW = 0.0430	Unknown	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G08290	Predicted Co-purification	FSW = 0.3668	Unknown	YLS8 CATALYTIC
AT2G18510	Predicted Co-purification	FSW = 0.0699	Unknown	EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G23930	Predicted Co-purification Affinity Capture-MS	FSW = 0.3179	Unknown	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G15520	Predicted Co-purification	FSW = 0.0366	Unknown	40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT5G27720	Predicted Co-purification	FSW = 0.1558	Unknown	EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G11500	Predicted interaction prediction	FSW = 0.3056	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT2G47640	Predicted Affinity Capture-MS Co-purification	FSW = 0.2697	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G19840	Predicted Co-purification	FSW = 0.2130	Unknown	FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G50670	Predicted Co-purification	FSW = 0.0762	Unknown	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G25630	Predicted Co-purification	FSW = 0.0301	Unknown	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G20580	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.4141	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Co-purification	FSW = 0.2578	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT3G62310	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.1083	Unknown	RNA HELICASE PUTATIVE
AT1G04510	Predicted Phylogenetic profile method Co-expression	FSW = 0.4253	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G41500	Predicted Affinity Capture-Western Co-purification	FSW = 0.3050	Unknown	EMB2776 NUCLEOTIDE BINDING
AT3G07260	Predicted two hybrid	FSW = 0.0277	Unknown	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT3G18130	Predicted Co-purification	FSW = 0.0180	Unknown	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G65470	Predicted Phenotypic Enhancement	FSW = 0.0177	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G43810	Predicted Co-purification	FSW = 0.0975	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G03330	Predicted Co-purification	FSW = 0.1837	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860	Predicted Co-purification	FSW = 0.1581	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G41840	Predicted Co-purification	FSW = 0.0639	Unknown	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT4G30330	Predicted Co-purification	FSW = 0.2775	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT5G58420	Predicted Co-purification	FSW = 0.0489	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G19120	Predicted Co-purification	FSW = 0.0817	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted Co-purification	FSW = 0.1259	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification interaction prediction	FSW = 0.3108	Unknown	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT4G22380	Predicted Co-purification	FSW = 0.0580	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G26560	Predicted Affinity Capture-MS	FSW = 0.0997	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G29330	Predicted Synthetic Lethality	FSW = 0.0189	Unknown	ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT4G15900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interaction prediction Co-expression	FSW = 0.1637	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G16400	Predicted Gene fusion method	FSW = 0.0578	Unknown	CYP79F2 OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING
AT4G02570	Predicted interologs mapping	FSW = 0.0116	Unknown	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT5G20850	Predicted Synthetic Rescue	FSW = 0.0097	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G72340	Predicted two hybrid	FSW = 0.0048	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT3G12280	Predicted Phenotypic Enhancement	FSW = 0.0084	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G59490	Predicted two hybrid	FSW = 0.0173	Unknown	UNKNOWN PROTEIN
AT3G48470	Predicted Phenotypic Enhancement	FSW = 0.0119	Unknown	EMB2423 (EMBRYO DEFECTIVE 2423)
AT1G03530	Predicted two hybrid two hybrid Co-expression	FSW = 0.0525	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT5G06160	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS Co-purification Co-expression	FSW = 0.2991	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G51170	Predicted two hybrid two hybrid	FSW = 0.0082	Unknown	UNKNOWN PROTEIN
AT5G52350	Predicted two hybrid	FSW = 0.0088	Unknown	ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING
AT1G01350	Predicted Affinity Capture-MS	FSW = 0.0290	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G10580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1330	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G14640	Predicted Affinity Capture-MS Co-purification	FSW = 0.2815	Unknown	SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G14910	Predicted Affinity Capture-Western	FSW = 0.0207	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT1G16350	Predicted Co-purification	FSW = 0.0199	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G17070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2370	Unknown	D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G17130	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-Western interaction prediction	FSW = 0.1186	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT1G60170	Predicted Co-purification	FSW = 0.3477	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G65660	Predicted Affinity Capture-MS	FSW = 0.0894	Unknown	SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT2G15230	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Co-purification Phenotypic Suppression	FSW = 0.0378	Unknown	ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G20560	Predicted Co-purification	FSW = 0.0142	Unknown	DNAJ HEAT SHOCK FAMILY PROTEIN
AT2G32600	Predicted Affinity Capture-MS Co-purification	FSW = 0.1814	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G80930	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1659	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G27920	Predicted interologs mapping	FSW = 0.0165	Unknown	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G47830	Predicted Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation interologs mapping	FSW = 0.0859	Unknown	CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1)
AT3G03180	Predicted Affinity Capture-MS	FSW = 0.0057	Unknown	GOT1-LIKE FAMILY PROTEIN
AT3G12760	Predicted Affinity Capture-MS	FSW = 0.0294	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK)
AT4G03430	Predicted Affinity Capture-MS Co-purification	FSW = 0.2276	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G21110	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1613	Unknown	G10 FAMILY PROTEIN
AT4G35620	Predicted interologs mapping	FSW = 0.0202	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G27640	Predicted Affinity Capture-MS	FSW = 0.0180	Unknown	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G28740	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Co-purification interaction prediction	FSW = 0.2300	Unknown	TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS synthetic growth defect two hybrid Co-purification interaction prediction Co-expression	FSW = 0.2871	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G03340	Predicted Co-purification	FSW = 0.1434	Unknown	UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G05760	Predicted Co-purification	FSW = 0.1513	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G47120	Predicted Affinity Capture-MS Co-purification	FSW = 0.0402	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G55220	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3992	Unknown	SPLICING FACTOR PUTATIVE
AT4G00660	Predicted Co-purification	FSW = 0.0699	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G21660	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3011	Unknown	PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT4G22350	Predicted Co-purification	FSW = 0.0084	Unknown	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN
AT5G16260	Predicted Co-purification	FSW = 0.0547	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G46400	Predicted Co-purification	FSW = 0.2823	Unknown	PRP39-2
AT1G56450	Predicted two hybrid	FSW = 0.0031	Unknown	PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G31970	Predicted Gene fusion method	FSW = 0.0354	Unknown	STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G41080	Predicted Gene fusion method	FSW = 0.0186	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G74110	Predicted Gene fusion method	FSW = 0.0578	Unknown	CYP78A10 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT1G20300	Predicted Gene fusion method	FSW = 0.1341	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G45970	Predicted Gene fusion method	FSW = 0.0810	Unknown	CYP86A8 FATTY ACID (OMEGA-1)-HYDROXYLASE/ OXYGEN BINDING
AT4G32450	Predicted Gene fusion method	FSW = 0.0465	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G28250	Predicted Gene fusion method	FSW = 0.0082	Unknown	NCRK KINASE
AT2G42850	Predicted Gene fusion method	FSW = 0.0325	Unknown	CYP718 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT4G04700	Predicted Gene fusion method	FSW = 0.0044	Unknown	CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G16380	Predicted Gene fusion method	FSW = 0.1454	Unknown	PAB6 (POLY(A) BINDING PROTEIN 6) RNA BINDING / TRANSLATION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G33340 - ( nucleotide binding / ubiquitin-protein ligase )

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