Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08290 - ( YLS8 catalytic )
34 Proteins interacs with AT5G08290| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G09760
   | PredictedAffinity Capture-MS | FSW = 0.4489
| Class C:nucleuscytosol | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT3G48750
| Predictedsynthetic growth defect | FSW = 0.0042
| Class C:nucleuscytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT4G02840
| PredictedAffinity Capture-MS | FSW = 0.5700
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G20960
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4912
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.3442
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT2G43810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1969
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.1641
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G03870
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2057
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.4762
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G23930
| PredictedAffinity Capture-MS | FSW = 0.5365
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G27720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2975
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G11500
| Predictedinteraction prediction | FSW = 0.5316
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
| AT1G04510
| PredictedCo-purification | FSW = 0.3472
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G03330
| PredictedAffinity Capture-MS | FSW = 0.3519
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT2G47640
| PredictedAffinity Capture-MS | FSW = 0.3646
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT2G41500
| PredictedAffinity Capture-MS | FSW = 0.5419
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT1G20580
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.6184
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT2G33340
| PredictedCo-purification | FSW = 0.3668
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.4417
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT2G41020
| Predictedin vivotwo hybrid | FSW = 0.0541
| Unknown | WW DOMAIN-CONTAINING PROTEIN |
| AT4G03430
| Predictedinteraction predictiontwo hybridAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.4346
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.4922
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.7385
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT2G19560
| PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
| AT3G05760
| PredictedAffinity Capture-MS | FSW = 0.3508
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G00660
| PredictedAffinity Capture-MS | FSW = 0.1977
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.4800
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G06160
| PredictedAffinity Capture-MS | FSW = 0.4386
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G46400
| PredictedAffinity Capture-MS | FSW = 0.5558
| Unknown | PRP39-2 |
| AT5G13010
| Predictedinteraction prediction | FSW = 0.0373
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT3G24730
| PredictedPhylogenetic profile method | FSW = 0.0483
| Unknown | CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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