Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19560 - ( EER5 (ENHANCED ETHYLENE RESPONSE 5) )
19 Proteins interacs with AT2G19560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G10650 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1212
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN-RELATED (TAIRAT5G202001) HAS 51621 BLAST HITS TO 25162 PROTEINS IN 1378 SPECIES ARCHAE - 161 BACTERIA - 11485 METAZOA - 15659 FUNGI - 10121 PLANTS - 1099 VIRUSES - 600 OTHER EUKARYOTES - 12496 (SOURCE NCBI BLINK) |
AT2G39340 | Experimentaltwo hybridprotein complementation assay | FSW = 0.3300
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G45010 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0988
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT5G16310 | Experimentaltwo hybrid | FSW = 0.1565
| Unknown | UCH1 UBIQUITIN THIOLESTERASE |
AT5G61290 | Experimentaltwo hybrid | FSW = 0.2000
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G38280 | Experimentaltwo hybrid | FSW = 0.0745
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT3G06290 | Experimentaltwo hybridprotein complementation assay | FSW = 0.2424
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SAC3/GANP/NIN1/MTS3/EIF-3 P25 (INTERPROIPR005062) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SAC3/GANP FAMILY PROTEIN (TAIRAT3G543801) HAS 1341 BLAST HITS TO 841 PROTEINS IN 168 SPECIES ARCHAE - 0 BACTERIA - 24 METAZOA - 448 FUNGI - 228 PLANTS - 85 VIRUSES - 0 OTHER EUKARYOTES - 556 (SOURCE NCBI BLINK) |
AT5G53480 | Predictedtwo hybridtwo hybrid | FSW = 0.0111
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0022
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | YLS8 CATALYTIC |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0257
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT3G11500 | Predictedinteraction prediction | FSW = 0.0833
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G22920 | Predictedtwo hybridtwo hybrid | FSW = 0.0291
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT3G02820 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0079
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454