Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45010 - ( ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) )
22 Proteins interacs with AT5G45010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20200 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.0465
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G75990 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0416
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT4G37010 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0136
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT5G01630 | Experimentaltwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.1177
| Unknown | BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G20850 | Experimental | FSW = 0.0245
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G22880 | Experimental | FSW = 0.0464
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G38630 | Experimental | FSW = 0.0238
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G16310 | Experimental | FSW = 0.1385
| Unknown | UCH1 UBIQUITIN THIOLESTERASE |
AT5G61290 | Experimental | FSW = 0.0769
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT4G00020 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.1142
| Unknown | PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT2G19560 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0988
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0009
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G20620 | Predictedinterologs mapping | FSW = 0.0554
| Unknown | CAT3 (CATALASE 3) CATALASE |
AT5G62880 | Predictedinterologs mappingtwo hybrid | FSW = 0.0152
| Unknown | ARAC10 GTP BINDING |
AT5G39840 | Predictedinteraction prediction | FSW = 0.0914
| Unknown | ATP-DEPENDENT RNA HELICASE MITOCHONDRIAL PUTATIVE |
AT1G71270 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | POK (POKY POLLEN TUBE) |
AT1G71300 | Predictedtwo hybrid | FSW = 0.0865
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
AT5G40870 | Predictedtwo hybridtwo hybrid | FSW = 0.0427
| Unknown | ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1) ATP BINDING / KINASE/ URACIL PHOSPHORIBOSYLTRANSFERASE/ URIDINE KINASE |
AT5G54670 | Predictedinteraction prediction | FSW = 0.0355
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT3G56640 | Predictedinteraction prediction | FSW = 0.0081
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G22590 | Predictedinteraction prediction | FSW = 0.0042
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT2G43790 | Predictedinteraction prediction | FSW = 0.0081
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454