Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G03340 - ( UNE6 (unfertilized embryo sac 6) )
46 Proteins interacs with AT3G03340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07590 | PredictedAffinity Capture-MS | FSW = 0.2324
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2592
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0193
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G20620 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0483
| Unknown | CAT3 (CATALASE 3) CATALASE |
AT1G20960 | PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.2877
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2145
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G69740 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2505
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1878
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedCo-purification | FSW = 0.1434
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G77210 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.0315
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2109
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G19840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2380
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G50670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.2255
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G64630 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G30220 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3284
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.3165
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT3G11500 | Predictedinteraction prediction | FSW = 0.2441
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3597
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G44200 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1943
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT1G04510 | PredictedCo-purification | FSW = 0.1613
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18040 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0350
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT2G46520 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0834
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G54560 | PredictedAffinity Capture-Western | FSW = 0.0335
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G70290 | PredictedAffinity Capture-Western | FSW = 0.0383
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G77780 | PredictedSynthetic Rescue | FSW = 0.0267
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G27170 | Predictedinteraction predictiontwo hybrid | FSW = 0.0138
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT1G08190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G29800 | PredictedPhenotypic Enhancement | FSW = 0.0343
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G79210 | PredictedAffinity Capture-Western | FSW = 0.0086
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT5G44740 | Predictedtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0216
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2580
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0610
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G20020 | PredictedAffinity Capture-Western | FSW = 0.0155
| Unknown | UNKNOWN PROTEIN |
AT5G46400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3474
| Unknown | PRP39-2 |
AT1G44910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2449
| Unknown | PROTEIN BINDING |
AT1G11650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2126
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.1302
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G04080 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2016
| Unknown | PRP39 BINDING |
AT1G29550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0314
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G04950 | Predictedinteraction predictiontwo hybrid | FSW = 0.0179
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G19670 | Predictedinteraction prediction | FSW = 0.0950
| Unknown | PROTEIN BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454