Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77210 - ( sugar transporter putative )
55 Proteins interacs with AT1G77210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G12140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4491
| Class C:plasma membrane | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT2G34480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2350
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G20620 | Predictedsynthetic growth defect | FSW = 0.0829
| Class C:plasma membrane | CAT3 (CATALASE 3) CATALASE |
AT1G45145 | PredictedAffinity Capture-MS | FSW = 0.0125
| Class C:plasma membrane | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G71860 | PredictedAffinity Capture-Western | FSW = 0.0222
| Class C:plasma membrane | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G48930 | Predictedbiochemical | FSW = 0.0120
| Class C:plasma membrane | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.0130
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G75170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3396
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G26340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0129
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G35020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1721
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G33090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1697
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G01320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1968
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0326
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT4G01370 | Predictedsynthetic growth defect | FSW = 0.0103
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G20630 | PredictedSynthetic Rescue | FSW = 0.0508
| Unknown | CAT1 (CATALASE 1) CATALASE |
AT3G20550 | Predictedbiochemical | FSW = 0.0200
| Unknown | DDL (DAWDLE) |
AT2G44350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1283
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0094
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT2G30390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3020
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0782
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G09680 | PredictedAffinity Capture-MS | FSW = 0.0604
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23A) |
AT2G40290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1728
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3580
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT1G17560 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | HLL (HUELLENLOS) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G47630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1878
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G79650 | PredictedAffinity Capture-MS | FSW = 0.0634
| Unknown | RAD23 DAMAGED DNA BINDING |
AT1G07780 | PredictedSynthetic Rescue | FSW = 0.0968
| Unknown | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0435
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G09580 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G10600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3862
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT1G43080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3807
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G66590 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | COX19 FAMILY PROTEIN |
AT1G25260 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0561
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G71530 | PredictedSynthetic Rescue | FSW = 0.0059
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G47970 | PredictedSynthetic RescueAffinity Capture-MS | FSW = 0.2495
| Unknown | NPL4 FAMILY PROTEIN |
AT3G03340 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.0315
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G06470 | Predictedbiochemical | FSW = 0.0296
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0942
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G52890 | Predictedbiochemical | FSW = 0.0627
| Unknown | KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G59410 | PredictedAffinity Capture-Western | FSW = 0.0215
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G22140 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G22790 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54800 | PredictedSynthetic Rescue | FSW = 0.0631
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G55080 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G59440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2639
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT2G32415 | PredictedPhenotypic Enhancement | FSW = 0.0281
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1218
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G13010 | PredictedAffinity Capture-MS | FSW = 0.1474
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G18570 | PredictedSynthetic Lethality | FSW = 0.0174
| Unknown | GTP1/OBG FAMILY PROTEIN |
AT5G39400 | Predictedsynthetic growth defect | FSW = 0.0645
| Unknown | PTEN1 PHOSPHATASE |
AT1G03840 | PredictedGene fusion method | FSW = 0.0244
| Unknown | MGP (MAGPIE) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G16640 | PredictedGene fusion method | FSW = 0.0244
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454