Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71860 - ( PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) protein tyrosine phosphatase )
68 Proteins interacs with AT1G71860| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G43790
   | Experimentalprotein complementation assay | FSW = 0.0307
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
| AT3G45640
| Experimentalprotein complementation assay | FSW = 0.0283
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G10450
| Predictedtwo hybrid | FSW = 0.0504
| Class C:plasma membranenucleus | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G48750
| Predictedbiochemicalbiochemical | FSW = 0.0144
| Class C:plasma membranenucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G62880
| PredictedSynthetic Rescue | FSW = 0.0204
| Class C:plasma membranenucleus | ARAC10 GTP BINDING |
| AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0078
| Class C:plasma membranenucleus | RNA BINDING |
| AT4G30920
| Predictedtwo hybrid | FSW = 0.0150
| Class C:plasma membrane | CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN |
| AT4G36750
| PredictedSynthetic Lethality | FSW = 0.0255
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
| AT3G28710
| PredictedSynthetic Lethality | FSW = 0.0106
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0113
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G27500
| PredictedSynthetic Lethality | FSW = 0.0541
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT5G41600
| Predictedtwo hybrid | FSW = 0.0152
| Class C:plasma membrane | BTI3 (VIRB2-INTERACTING PROTEIN 3) |
| AT2G32670
| PredictedSynthetic Lethality | FSW = 0.0672
| Class C:plasma membrane | ATVAMP725 |
| AT5G45970
| PredictedPhenotypic Enhancement | FSW = 0.0449
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT5G19450
| PredictedSynthetic Lethality | FSW = 0.0122
| Class C:plasma membrane | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G77210
| PredictedAffinity Capture-Western | FSW = 0.0222
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
| AT5G19330
| Predictedin vivoin vitroin vitroin vivotwo hybridin vivoAffinity Capture-Western | FSW = 0.0649
| Class C:plasma membrane | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT4G18800
| PredictedAffinity Capture-Western | FSW = 0.0308
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0039
| Class C:nucleus | HISTONE H4 |
| AT3G52250
| PredictedSynthetic Lethality | FSW = 0.0219
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G60440
| PredictedPhenotypic Suppression | FSW = 0.0619
| Class C:nucleus | AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G13920
| PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT3G52660
| Predictedtwo hybrid | FSW = 0.0139
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G00830
| Predictedtwo hybrid | FSW = 0.0152
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G62870
| Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0348
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT5G10350
| PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted Complex | FSW = 0.0340
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
| AT4G01370
| PredictedbiochemicalReconstituted ComplexAffinity Capture-Westerntwo hybridbiochemical | FSW = 0.0308
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
| AT3G19170
| PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0662
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
| AT5G06290
| PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0091
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G48880
| PredictedAffinity Capture-Western | FSW = 0.0266
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
| AT5G48545
| Predictedbiochemical | FSW = 0.0711
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
| AT5G49945
| Predictedtwo hybrid | FSW = 0.0139
| Unknown | UNKNOWN PROTEIN |
| AT5G03730
| Predictedin vitroin vitroin vivoin vivoPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppressionin vivoAffinity Capture-MSin vitro | FSW = 0.0850
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT5G11210
| Predictedin vivoin vitrotwo hybrid | FSW = 0.0749
| Unknown | ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT3G03950
| PredictedPhenotypic Suppression | FSW = 0.0185
| Unknown | PROTEIN BINDING |
| AT5G56710
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0240
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT1G19730
| PredictedColocalization | FSW = 0.0274
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
| AT1G67140 | Predictedtwo hybrid | FSW = 0.0563
| Unknown | SWEETIE (SWEETIE) BINDING |
| AT4G11330
| PredictedPhenotypic Suppression | FSW = 0.0399
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT5G14180
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.0517
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
| AT5G56580
| PredictedPhenotypic Suppression | FSW = 0.0923
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
| AT5G64350
| Predictedtwo hybrid | FSW = 0.0142
| Unknown | FKBP12 (FK506-BINDING PROTEIN) FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT3G59020
| PredictedAffinity Capture-Western | FSW = 0.0266
| Unknown | BINDING / PROTEIN TRANSPORTER |
| AT5G21274
| Predictedtwo hybrid | FSW = 0.0056
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
| AT3G57550
| Predictedin vivoin vitrotwo hybrid | FSW = 0.0294
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
| AT5G22400
| PredictedAffinity Capture-Westernin vivoin vivo | FSW = 0.0914
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
| AT1G34580
| PredictedSynthetic Lethality | FSW = 0.0415
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G69750
| PredictedbiochemicalAffinity Capture-Western | FSW = 0.0385
| Unknown | COX19 FAMILY PROTEIN |
| AT1G70290
| PredictedSynthetic Rescue | FSW = 0.0270
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT1G03740
| Predictedtwo hybrid | FSW = 0.0376
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G13580
| PredictedAffinity Capture-Western | FSW = 0.0488
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
| AT2G29190
| PredictedSynthetic Rescue | FSW = 0.0222
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
| AT3G06483
| PredictedAffinity Capture-Western | FSW = 0.0545
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
| AT3G47610
| PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT4G01860
| PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0515
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G20020
| Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | UNKNOWN PROTEIN |
| AT4G35520
| PredictedAffinity Capture-Western | FSW = 0.0147
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
| AT5G14060
| PredictedSynthetic Lethality | FSW = 0.0294
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
| AT1G76920
| PredictedSynthetic Lethality | FSW = 0.0101
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
| AT2G35390
| PredictedColocalization | FSW = 0.0194
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G46280
| PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G06470
| PredictedPhenotypic Enhancement | FSW = 0.0555
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT4G25540
| PredictedSynthetic Lethality | FSW = 0.0172
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
| AT4G30540
| PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0179
| Unknown | GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN |
| AT5G04800
| PredictedSynthetic Lethality | FSW = 0.0103
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
| AT3G12340
| Predictedbiochemical | FSW = 0.0119
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT5G24940
| Predictedinteraction prediction | FSW = 0.0150
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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