Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71860 - ( PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) protein tyrosine phosphatase )

68 Proteins interacs with AT1G71860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G43790

Experimental

protein complementation assay

FSW = 0.0307

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G45640

Experimental

protein complementation assay

FSW = 0.0283

Unknown

ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G10450

Predicted

two hybrid

FSW = 0.0504

Class C:

plasma membrane

nucleus

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G48750

Predicted

biochemical

biochemical

FSW = 0.0144

Class C:

plasma membrane

nucleus

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G62880

Predicted

Synthetic Rescue

FSW = 0.0204

Class C:

plasma membrane

nucleus

ARAC10 GTP BINDING
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0078

Class C:

plasma membrane

nucleus

RNA BINDING
AT4G30920

Predicted

two hybrid

FSW = 0.0150

Class C:

plasma membrane

CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN
AT4G36750

Predicted

Synthetic Lethality

FSW = 0.0255

Class C:

plasma membrane

QUINONE REDUCTASE FAMILY PROTEIN
AT3G28710

Predicted

Synthetic Lethality

FSW = 0.0106

Class C:

plasma membrane

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0113

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G27500

Predicted

Synthetic Lethality

FSW = 0.0541

Class C:

plasma membrane

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G41600

Predicted

two hybrid

FSW = 0.0152

Class C:

plasma membrane

BTI3 (VIRB2-INTERACTING PROTEIN 3)
AT2G32670

Predicted

Synthetic Lethality

FSW = 0.0672

Class C:

plasma membrane

ATVAMP725
AT5G45970

Predicted

Phenotypic Enhancement

FSW = 0.0449

Class C:

plasma membrane

ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT5G19450

Predicted

Synthetic Lethality

FSW = 0.0122

Class C:

plasma membrane

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G77210

Predicted

Affinity Capture-Western

FSW = 0.0222

Class C:

plasma membrane

SUGAR TRANSPORTER PUTATIVE
AT5G19330

Predicted

in vivo

in vitro

in vitro

in vivo

two hybrid

in vivo

Affinity Capture-Western

FSW = 0.0649

Class C:

plasma membrane

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT4G18800

Predicted

Affinity Capture-Western

FSW = 0.0308

Class C:

plasma membrane

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0039

Class C:

nucleus

HISTONE H4
AT3G52250

Predicted

Synthetic Lethality

FSW = 0.0219

Class C:

nucleus

DNA BINDING / TRANSCRIPTION FACTOR
AT5G60440

Predicted

Phenotypic Suppression

FSW = 0.0619

Class C:

nucleus

AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0157

Class C:

nucleus

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G52660

Predicted

two hybrid

FSW = 0.0139

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G00830

Predicted

two hybrid

FSW = 0.0152

Class C:

nucleus

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G62870

Predicted

two hybrid

Phenotypic Enhancement

FSW = 0.0348

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0340

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT4G01370

Predicted

biochemical

Reconstituted Complex

Affinity Capture-Western

two hybrid

biochemical

FSW = 0.0308

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT3G19170

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0662

Unknown

ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE
AT5G06290

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0091

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.0222

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT5G48880

Predicted

Affinity Capture-Western

FSW = 0.0266

Unknown

PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT5G48545

Predicted

biochemical

FSW = 0.0711

Unknown

HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN
AT5G49945

Predicted

two hybrid

FSW = 0.0139

Unknown

UNKNOWN PROTEIN
AT5G03730

Predicted

in vitro

in vitro

in vivo

in vivo

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Suppression

in vivo

Affinity Capture-MS

in vitro

FSW = 0.0850

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G11210

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0749

Unknown

ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL
AT3G03950

Predicted

Phenotypic Suppression

FSW = 0.0185

Unknown

PROTEIN BINDING
AT5G56710

Predicted

Synthetic Lethality

interologs mapping

FSW = 0.0240

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G19730

Predicted

Colocalization

FSW = 0.0274

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G67140Predicted

two hybrid

FSW = 0.0563

Unknown

SWEETIE (SWEETIE) BINDING
AT4G11330

Predicted

Phenotypic Suppression

FSW = 0.0399

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G14180

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0517

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G56580

Predicted

Phenotypic Suppression

FSW = 0.0923

Unknown

MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE
AT5G64350

Predicted

two hybrid

FSW = 0.0142

Unknown

FKBP12 (FK506-BINDING PROTEIN) FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G59020

Predicted

Affinity Capture-Western

FSW = 0.0266

Unknown

BINDING / PROTEIN TRANSPORTER
AT5G21274

Predicted

two hybrid

FSW = 0.0056

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT3G57550

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0294

Unknown

AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT5G22400

Predicted

Affinity Capture-Western

in vivo

in vivo

FSW = 0.0914

Unknown

RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT1G34580

Predicted

Synthetic Lethality

FSW = 0.0415

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G69750

Predicted

biochemical

Affinity Capture-Western

FSW = 0.0385

Unknown

COX19 FAMILY PROTEIN
AT1G70290

Predicted

Synthetic Rescue

FSW = 0.0270

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT1G03740

Predicted

two hybrid

FSW = 0.0376

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G13580

Predicted

Affinity Capture-Western

FSW = 0.0488

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT2G29190

Predicted

Synthetic Rescue

FSW = 0.0222

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G06483

Predicted

Affinity Capture-Western

FSW = 0.0545

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G47610

Predicted

Synthetic Lethality

FSW = 0.0100

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G01860

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0515

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G20020

Predicted

synthetic growth defect

FSW = 0.0227

Unknown

UNKNOWN PROTEIN
AT4G35520

Predicted

Affinity Capture-Western

FSW = 0.0147

Unknown

MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.0294

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT1G76920

Predicted

Synthetic Lethality

FSW = 0.0101

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G35390

Predicted

Colocalization

FSW = 0.0194

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G46280

Predicted

Synthetic Lethality

FSW = 0.0033

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G06470

Predicted

Phenotypic Enhancement

FSW = 0.0555

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G25540

Predicted

Synthetic Lethality

FSW = 0.0172

Unknown

MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G30540

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0179

Unknown

GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT5G04800

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT3G12340

Predicted

biochemical

FSW = 0.0119

Unknown

FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G24940

Predicted

interaction prediction

FSW = 0.0150

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454