Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19170 - ( ATPREP1 (PRESEQUENCE PROTEASE 1) metalloendopeptidase )
22 Proteins interacs with AT3G19170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49630 | PredictedShared biological functionEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0426
| Class C:plastidmitochondrion | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
AT3G23990 | Predictedtwo hybrid | FSW = 0.0204
| Class C:mitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G13860 | Predictedtwo hybrid | FSW = 0.0447
| Class C:mitochondrion | HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING |
AT1G71860 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0662
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G41060 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT4G11380 | Predictedsynthetic growth defect | FSW = 0.0131
| Unknown | BETA-ADAPTIN PUTATIVE |
AT4G20440 | Predictedinterologs mapping | FSW = 0.0164
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT4G35640 | PredictedAffinity Capture-MS | FSW = 0.0577
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT5G56710 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G07340 | Predictedbiochemical | FSW = 0.0465
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G70290 | PredictedSynthetic Rescue | FSW = 0.0510
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0347
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G14090 | Predictedinterologs mapping | FSW = 0.0237
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT1G34340 | Predictedinterologs mapping | FSW = 0.0201
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT2G29190 | PredictedSynthetic Rescue | FSW = 0.0235
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT4G10360 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G34555 | Predictedbiochemical | FSW = 0.0356
| Unknown | 40S RIBOSOMAL PROTEIN S25 PUTATIVE |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G20000 | Predictedinterologs mapping | FSW = 0.0330
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454