Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23990 - ( HSP60 (HEAT SHOCK PROTEIN 60) ATP binding )

64 Proteins interacs with AT3G23990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0260

Class C:

vacuole

mitochondrion

 VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT2G33210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1442

Class C:

vacuole

mitochondrion

 HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT2G28000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2303

Class C:

vacuole

mitochondrion

 CPN60A (CHAPERONIN-60ALPHA) ATP BINDING / PROTEIN BINDING
AT3G04120

Predicted

two hybrid

FSW = 0.0304

Class C:

vacuole

mitochondrion

 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G13860

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4186

Class C:

vacuole

mitochondrion

 HSP60-3A (HEAT SHOCK PROTEIN 60-3A) ATP BINDING / PROTEIN BINDING
AT5G34850

Predicted

two hybrid

FSW = 0.0144

Class C:

vacuole

 PAP26 (PURPLE ACID PHOSPHATASE 26) ACID PHOSPHATASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G48000

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0464

Class C:

mitochondrion

 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ATP BINDING / ALDEHYDE DEHYDROGENASE (NAD)
AT3G13470

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1978

Class C:

mitochondrion

 CHAPERONIN PUTATIVE
AT3G19170

Predicted

two hybrid

FSW = 0.0204

Class C:

mitochondrion

 ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE
AT5G65780

Predicted

Affinity Capture-MS

FSW = 0.0157

Class C:

mitochondrion

 ATBCAT-5 BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G37040

Predicted

two hybrid

FSW = 0.0304

Class C:

mitochondrion

 MAP1D (METHIONINE AMINOPEPTIDASE 1D) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT5G56500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2085

Class C:

mitochondrion

 ATP BINDING / PROTEIN BINDING
AT1G70320

Predicted

two hybrid

FSW = 0.0403

Class C:

mitochondrion

 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE
AT1G72330

Predicted

Affinity Capture-MS

FSW = 0.0160

Class C:

mitochondrion

 ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G14980

Predicted

interaction prediction

two hybrid

two hybrid

in vivo

in vivo

in vivo

two hybrid

Reconstituted Complex

Enriched domain pair

Co-expression

FSW = 0.0922

Class C:

mitochondrion

 CPN10 (CHAPERONIN 10) CHAPERONE BINDING
AT1G17530

Predicted

Co-purification

FSW = 0.0331

Class C:

mitochondrion

 ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G24180

Predicted

two hybrid

FSW = 0.0212

Class C:

mitochondrion

 IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT1G69220

Predicted

two hybrid

FSW = 0.0057

Class C:

mitochondrion

 SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
ATMG00510Predicted

two hybrid

FSW = 0.0146

Class C:

mitochondrion

 NADH DEHYDROGENASE SUBUNIT 7
AT4G01370

Predicted

Affinity Capture-MS

FSW = 0.0023

Unknown

 ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G55490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2222

Unknown

 CPN60B (CHAPERONIN 60 BETA) ATP BINDING / PROTEIN BINDING
AT5G36880

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

 ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT2G19870

Predicted

Affinity Capture-MS

FSW = 0.0252

Unknown

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT3G10050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0605

Unknown

 OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT5G18820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2432

Unknown

 EMB3007 (EMBRYO DEFECTIVE 3007) ATP BINDING / PROTEIN BINDING
AT1G26230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1952

Unknown

 CHAPERONIN PUTATIVE
AT3G04770

Predicted

Affinity Capture-MS

FSW = 0.0514

Unknown

 RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G55200Predicted

two hybrid

FSW = 0.0106

Unknown

 SPLICING FACTOR PUTATIVE
AT3G48750

Predicted

two hybrid

FSW = 0.0089

Unknown

 CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G55360

Predicted

Affinity Capture-MS

FSW = 0.0102

Unknown

 CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT5G52640

Predicted

two hybrid

FSW = 0.0154

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0045

Unknown

 APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT5G12370

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

 SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT5G12480

Predicted

biochemical

FSW = 0.0024

Unknown

 CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G29260

Predicted

two hybrid

FSW = 0.0309

Unknown

 PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

 EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT5G44500

Predicted

two hybrid

FSW = 0.0019

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT4G34390

Predicted

two hybrid

FSW = 0.0077

Unknown

 XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT5G63080

Predicted

two hybrid

FSW = 0.0296

Unknown

 TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT5G02570

Predicted

Affinity Capture-Western

FSW = 0.0157

Unknown

 HISTONE H2B PUTATIVE
AT5G56280

Predicted

two hybrid

FSW = 0.0311

Unknown

 CSN6A
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G02570

Predicted

two hybrid

FSW = 0.0025

Unknown

 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT2G42120

Predicted

two hybrid

FSW = 0.0075

Unknown

 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G20850

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G01510

Predicted

two hybrid

FSW = 0.0171

Unknown

 AN (ANGUSTIFOLIA) PROTEIN BINDING
AT2G29640

Predicted

two hybrid

FSW = 0.0882

Unknown

 JOSL (JOSEPHIN-LIKE PROTEIN)
AT3G11830

Predicted

two hybrid

FSW = 0.0183

Unknown

 CHAPERONIN PUTATIVE
AT5G24340

Predicted

two hybrid

FSW = 0.0141

Unknown

 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN
AT5G51795

Predicted

two hybrid

FSW = 0.0150

Unknown

 KIN17 DNA-BINDING PROTEIN-RELATED
AT5G56640

Predicted

two hybrid

FSW = 0.0146

Unknown

 MIOX5 INOSITOL OXYGENASE/ IRON ION BINDING
AT5G04180

Predicted

in vitro

in vitro

Affinity Capture-MS

FSW = 0.0149

Unknown

 ACA3 (ALPHA CARBONIC ANHYDRASE 3) CARBONATE DEHYDRATASE/ ZINC ION BINDING
AT1G10580

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0108

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G51310

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

 TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT2G22480

Predicted

Affinity Capture-Western

FSW = 0.0216

Unknown

 PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0438

Unknown

 CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0093

Unknown

 TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G26640

Predicted

Affinity Capture-MS

FSW = 0.0312

Unknown

 LWD2 (LIGHT-REGULATED WD 2) NUCLEOTIDE BINDING
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0084

Unknown

 ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G47630

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL MATRIX MMP37 (INTERPROIPR015222) HAS 224 BLAST HITS TO 224 PROTEINS IN 115 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 92 PLANTS - 19 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK)
AT5G14530

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G63400

Predicted

Gene fusion method

FSW = 0.0331

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G06145

Predicted

Gene fusion method

FSW = 0.0279

Unknown

 EMB1444 (EMBRYO DEFECTIVE 1444)

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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