Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51310 - ( tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase )
34 Proteins interacs with AT1G51310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0804
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G02520 | PredictedPhenotypic Enhancement | FSW = 0.0386
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0221
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G12520 | PredictedPhenotypic Suppression | FSW = 0.0856
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G19440 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE (CAD) |
AT1G10900 | PredictedSynthetic Lethality | FSW = 0.0166
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G07950 | PredictedPhenotypic Enhancement | FSW = 0.0327
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.1203
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G13940 | PredictedPhenotypic Suppression | FSW = 0.0631
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G35670 | PredictedPhenotypic Suppression | FSW = 0.0780
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0556
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.1140
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G44950 | PredictedPhenotypic Enhancement | FSW = 0.1036
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G59900 | PredictedPhenotypic Enhancement | FSW = 0.0658
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT2G43460 | Predictedtwo hybridtwo hybrid | FSW = 0.0249
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0173
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT3G53710 | Predictedtwo hybridtwo hybrid | FSW = 0.0188
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G59540 | Predictedtwo hybrid | FSW = 0.0065
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT1G10930 | PredictedPhenotypic Suppression | FSW = 0.0308
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49540 | PredictedPhenotypic Suppression | FSW = 0.0898
| Unknown | NUCLEOTIDE BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.1667
| Unknown | SNL5 (SIN3-LIKE 5) |
AT2G44150 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0988
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G09920 | PredictedSynthetic Lethality | FSW = 0.0173
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1210
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.1316
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0727
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G41880 | PredictedPhenotypic Suppression | FSW = 0.0866
| Unknown | POLA3 DNA PRIMASE |
AT5G45600 | PredictedPhenotypic Suppression | FSW = 0.2021
| Unknown | GAS41 PROTEIN BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0718
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.1263
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G79730 | PredictedPhenotypic Suppression | FSW = 0.1058
| Unknown | ELF7 (EARLY FLOWERING 7) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454