Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69220 - ( SIK1 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
39 Proteins interacs with AT1G69220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23990 | Predictedtwo hybrid | FSW = 0.0057
| Class C:mitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0060
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G59690 | Predictedtwo hybrid | FSW = 0.0030
| Unknown | HISTONE H4 |
AT2G27290 | Predictedtwo hybrid | FSW = 0.0523
| Unknown | UNKNOWN PROTEIN |
AT1G12310 | Predictedin vivoin vitro | FSW = 0.0285
| Unknown | CALMODULIN PUTATIVE |
AT4G20410 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) BINDING / TRANSPORTER |
AT5G45970 | PredictedReconstituted Complexin vitroin vitroin vitroin vivotwo hybridReconstituted Complex | FSW = 0.0721
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G59840 | Predictedin vivo | FSW = 0.0089
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT5G54280 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT1G65030 | Predictedin vivoin vitro | FSW = 0.0293
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G08730 | Predictedtwo hybridReconstituted Complex | FSW = 0.0287
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G57210 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | MICROTUBULE-ASSOCIATED PROTEIN-RELATED |
AT5G03730 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.0458
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G30910 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0131
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT3G56340 | Predictedtwo hybrid | FSW = 0.0226
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT1G35530 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G57870 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G16570 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7) METHYLTRANSFERASE |
AT4G38880 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3) AMIDOPHOSPHORIBOSYLTRANSFERASE |
AT5G19400 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | SMG7 |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G57610 | Predictedin vitroin vitroin vivo | FSW = 0.1058
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G58690 | Predictedin vivoin vitro | FSW = 0.0441
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT2G26210 | Predictedin vivo | FSW = 0.0539
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G18060 | Predictedin vitro | FSW = 0.0245
| Unknown | CLATHRIN BINDING |
AT5G19090 | Predictedin vitro | FSW = 0.0215
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G22400 | Predictedin vivo | FSW = 0.1111
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT5G46280 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT3G56420 | PredictedPhenotypic Enhancement | FSW = 0.0730
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN CORE (INTERPROIPR015467) THIOREDOXIN DOMAIN (INTERPROIPR013766) THIOREDOXIN CONSERVED SITE (INTERPROIPR017937) THIOREDOXIN-LIKE SUBDOMAIN (INTERPROIPR006662) THIOREDOXIN-LIKE (INTERPROIPR017936) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE (TAIRAT2G407901) HAS 6839 BLAST HITS TO 6830 PROTEINS IN 1457 SPECIES ARCHAE - 125 BACTERIA - 3259 METAZOA - 916 FUNGI - 420 PLANTS - 647 VIRUSES - 6 OTHER EUKARYOTES - 1466 (SOURCE NCBI BLINK) |
AT4G16360 | Predictedinterologs mapping | FSW = 0.0167
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT2G05790 | Predictedinterologs mapping | FSW = 0.0463
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G38290 | Predictedinterologs mapping | FSW = 0.0539
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT3G45030 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20A) |
AT5G50830 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | UNKNOWN PROTEIN |
AT4G32910 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT4G06599 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT1G03457 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT1G11290 | PredictedGene fusion method | FSW = 0.0245
| Unknown | CRR22 (CHLORORESPIRATORY REDUCTION22) ENDONUCLEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454