Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27500 - ( glycosyl hydrolase family 17 protein )
19 Proteins interacs with AT2G27500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0781
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G71860 | PredictedSynthetic Lethality | FSW = 0.0541
| Class C:plasma membrane | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G67500 | Predictedbiochemical | FSW = 0.0295
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT1G22840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0580
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G15170 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0392
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT3G52250 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G36170 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0072
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G28450 | PredictedAffinity Capture-MS | FSW = 0.1039
| Unknown | AGL58 (AGAMOUS-LIKE 58) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G29230 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.1600
| Unknown | TRANSCRIPTION FACTOR |
AT2G29190 | PredictedSynthetic Lethality | FSW = 0.0444
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT4G33950 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT4G34480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1455
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454