Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13580 - ( LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) )
112 Proteins interacs with AT1G13580Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.3512
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT5G66680![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0251
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G49010![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G19910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0176
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G01690![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | BINDING |
AT3G62870![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0537
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350![]() ![]() ![]() ![]() | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic LethalityPhenotypic Enhancement | FSW = 0.2237
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22110![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0863
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G45960![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0921
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G09660![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1144
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G13490![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0078
| Unknown | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G07420![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0321
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G40400![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0295
| Unknown | UNKNOWN PROTEIN |
AT1G22170![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0692
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT5G15450![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1569
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1004
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT2G45300![]() ![]() ![]() ![]() | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.1274
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G60540![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2656
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G71860![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0488
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G48930![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0224
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G58640![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0551
| Unknown | SELENOPROTEIN-RELATED |
AT1G11680![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0190
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G55360![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0371
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G04750![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.1921
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G32670![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2904
| Unknown | ATVAMP725 |
AT1G32090![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G25740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1341
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT1G80050![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1520
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G37790![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1811
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G18800![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1444
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G04460![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0867
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT3G60180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1940
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G28860![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1206
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G63780![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0217
| Unknown | IMP4 |
AT3G21700![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0070
| Unknown | SGP2 GTP BINDING |
AT3G13445![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1115
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G76300![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0933
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.1779
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G54840![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0143
| Unknown | SGP1 GTP BINDING |
AT3G57300![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G28460![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.1549
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2876
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G47630![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0994
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G30160![]() ![]() ![]() ![]() | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3434
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G02730![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0771
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G67730![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0709
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G17810![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0980
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G60360![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.2869
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200![]() ![]() ![]() ![]() | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectSynthetic Lethality | FSW = 0.3339
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G16420![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2610
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G19730![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0364
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1440
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G35490![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0092
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G02100![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1677
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G08750![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0478
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G20693![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3265
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G21370![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1811
| Unknown | UNKNOWN PROTEIN |
AT1G55300![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1872
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G68020![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1875
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G69640![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0430
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G78770![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1698
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G33560![]() ![]() ![]() ![]() | PredictedSynthetic LethalityPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1106
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G34750![]() ![]() ![]() ![]() | PredictedCo-purificationPhenotypic EnhancementAffinity Capture-MS | FSW = 0.2640
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34890![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1235
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G34980![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0454
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G48100![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1258
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G01090![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0046
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G06483![]() ![]() ![]() ![]() | PredictedSynthetic LethalitybiochemicalSynthetic LethalityPhenotypic Enhancement | FSW = 0.1449
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G09640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2083
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G11230![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.2899
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G11240![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2156
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G13210![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1432
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G21460![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.2107
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G22480![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0107
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G24010![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.2347
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G45240![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1308
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G14710![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0784
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT4G21490![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1427
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2631
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G38250![]() ![]() ![]() ![]() | PredictedPhenotypic SuppressionAffinity Capture-Western | FSW = 0.1979
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT4G39830![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0303
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G14180![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.3502
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G16980![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1982
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G45620![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1892
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G54940![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1869
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G58180![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0846
| Unknown | ATYKT62 |
AT5G64760![]() ![]() ![]() ![]() | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2965
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G65990![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0321
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G25155 | PredictedSynthetic Lethality | FSW = 0.1912
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G47830![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1054
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1370
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G15910![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.1399
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G37420![]() ![]() ![]() ![]() | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3434
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G02280![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0091
| Unknown | FLAVODOXIN FAMILY PROTEIN |
AT3G06470![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1019
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G25900![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1849
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1630
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04695![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1496
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04700![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0755
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G22330![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.0526
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT5G05420![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G10830![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0303
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G14060![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.4067
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G15240![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1073
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G41700![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G49970![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2500
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT1G14290![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0622
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G42005![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0385
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G22425![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0348
| Unknown | PEPTIDASE |
AT1G24470![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0743
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G18000![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0050
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454