Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08750 - ( GPI-anchor transamidase putative )
57 Proteins interacs with AT1G08750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0680
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0556
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G01320 | Predictedtwo hybridinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.0604
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G55190 | Predictedtwo hybridinteraction prediction | FSW = 0.0197
| Unknown | PRA7 |
AT4G04910 | PredictedPhenotypic Enhancement | FSW = 0.0479
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G01620 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT1G17745 | Predictedinteraction predictiontwo hybrid | FSW = 0.0111
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1457
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G51460 | Predictedtwo hybridinteraction prediction | FSW = 0.1957
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G11680 | Predictedtwo hybridinteraction prediction | FSW = 0.0779
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G55360 | Predictedtwo hybridinteraction prediction | FSW = 0.2129
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT5G05670 | Predictedtwo hybrid | FSW = 0.1338
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G63110 | Predictedinterologs mapping | FSW = 0.0459
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0726
| Unknown | LAG1 |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1318
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G29330 | Predictedtwo hybridinteraction prediction | FSW = 0.0077
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G04260 | Predictedtwo hybrid | FSW = 0.0236
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT1G67490 | PredictedPhenotypic Enhancement | FSW = 0.0995
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT2G39630 | Predictedtwo hybridinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1029
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G07140 | Predictedtwo hybridin vivoin vivoin vitrointeraction predictionCo-expression | FSW = 0.0196
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G18260 | Predictedinterologs mapping | FSW = 0.1040
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G67730 | Predictedtwo hybrid | FSW = 0.1266
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT4G36480 | Predictedtwo hybridinteraction prediction | FSW = 0.0133
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT5G66020 | Predictedtwo hybrid | FSW = 0.1252
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G19130 | Predictedtwo hybridin vivoin vivoin vitroin vitroAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0860
| Unknown | GPI TRANSAMIDASE COMPONENT FAMILY PROTEIN / GAA1-LIKE FAMILY PROTEIN |
AT1G57550 | Predictedtwo hybrid | FSW = 0.0407
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G69700 | Predictedtwo hybridCo-expression | FSW = 0.0722
| Unknown | ATHVA22C |
AT5G38460 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1590
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT4G24960 | Predictedinteraction prediction | FSW = 0.0850
| Unknown | ATHVA22D |
AT5G50720 | Predictedtwo hybrid | FSW = 0.0835
| Unknown | ATHVA22E |
AT1G02145 | PredictedPhenotypic Enhancement | FSW = 0.0607
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G22530 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1926
| Unknown | CATALYTIC/ TRANSFERASE |
AT5G27490 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G27970 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0674
| Unknown | BINDING |
AT5G52210 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0461
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0478
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16560 | Predictedtwo hybridinteraction prediction | FSW = 0.1275
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.1548
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G54370 | Predictedtwo hybridinteraction prediction | FSW = 0.0257
| Unknown | NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G69640 | Predictedtwo hybridinteraction prediction | FSW = 0.2420
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.2838
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.1622
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G19940 | Predictedtwo hybridinteraction prediction | FSW = 0.0047
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G17910 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT4G22750 | Predictedtwo hybrid | FSW = 0.0890
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT4G32530 | Predictedtwo hybridinteraction prediction | FSW = 0.0643
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G39830 | Predictedtwo hybridinteraction prediction | FSW = 0.2026
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT1G12730 | Predictedinterologs mapping | FSW = 0.0567
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G02410 | Predictedinterologs mapping | FSW = 0.0373
| Unknown | DIE2/ALG10 FAMILY |
AT2G39805 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT1G24320 | Predictedinterologs mapping | FSW = 0.0750
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
AT3G60800 | Predictedtwo hybrid | FSW = 0.0825
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.1934
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT2G25610 | Predictedtwo hybrid | FSW = 0.0900
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT1G14290 | Predictedtwo hybrid | FSW = 0.2441
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G38905 | Predictedinteraction prediction | FSW = 0.0690
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454