Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57300 - ( INO80 (INO80 ORTHOLOG) ATP binding / DNA binding / helicase/ nucleic acid binding )
50 Proteins interacs with AT3G57300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0981
| Class C:nucleus | HISTONE H4 |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0806
| Class C:nucleus | HTB1 DNA BINDING |
AT5G67630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1016
| Class C:nucleus | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1203
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT1G02740 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Class C:nucleus | CHROMATIN BINDING |
AT5G19310 | PredictedPhenotypic Enhancement | FSW = 0.0529
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G54610 | PredictedPhenotypic Enhancement | FSW = 0.1405
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0275
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT1G49240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0412
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | HISTONE H4 |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0551
| Unknown | BINDING |
AT4G38495 | PredictedAffinity Capture-MS | FSW = 0.1469
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT5G15450 | PredictedPhenotypic Suppression | FSW = 0.0415
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G49830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1111
| Unknown | DNA HELICASE-RELATED |
AT3G12110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0314
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G04750 | PredictedPhenotypic Suppression | FSW = 0.0320
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0256
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0368
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G20050 | PredictedPhenotypic Enhancement | FSW = 0.0197
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G27070 | PredictedAffinity Capture-Western | FSW = 0.0407
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.1186
| Unknown | H2AXA DNA BINDING |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G31170 | PredictedPhenotypic Suppression | FSW = 0.0248
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G32750 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G68020 | PredictedPhenotypic Enhancement | FSW = 0.0783
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G10070 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G12200 | PredictedAffinity Capture-Western | FSW = 0.0360
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2623
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0705
| Unknown | HISTONE H4 |
AT1G16360 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G54560 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G06670 | PredictedPhenotypic Enhancement | FSW = 0.0458
| Unknown | BINDING |
AT4G12090 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G34540 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G10390 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | HISTONE H3 |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | HISTONE H3 |
AT5G43500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0841
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G49970 | PredictedPhenotypic Suppression | FSW = 0.0458
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0072
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G58380 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G64760 | PredictedPhenotypic Suppression | FSW = 0.0969
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G10440 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | UNKNOWN PROTEIN |
AT1G09200 | PredictedAffinity Capture-MS | FSW = 0.0700
| Unknown | HISTONE H3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454