Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43500 - ( ATARP9 (ACTIN-RELATED PROTEIN 9) DNA binding / protein binding )
67 Proteins interacs with AT5G43500| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G38495
   | PredictedAffinity Capture-MS | FSW = 0.1972
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
| AT4G01370
| Predictedbiochemical | FSW = 0.0386
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
| AT5G59690 | PredictedAffinity Capture-Western | FSW = 0.1473
| Unknown | HISTONE H4 |
| AT5G43530
| Predictedsynthetic growth defect | FSW = 0.2417
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT5G67630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0917
| Unknown | DNA HELICASE PUTATIVE |
| AT5G22330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1226
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
| AT5G16630
| PredictedPhenotypic Suppression | FSW = 0.0713
| Unknown | RAD4 DAMAGED DNA BINDING |
| AT2G28190
| PredictedPhenotypic Enhancement | FSW = 0.2305
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
| AT1G12520
| PredictedSynthetic Lethality | FSW = 0.1874
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
| AT5G63110
| PredictedPhenotypic Suppression | FSW = 0.2036
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
| AT3G12110
| PredictedAffinity Capture-MS | FSW = 0.0507
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT5G12480
| Predictedbiochemical | FSW = 0.0134
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G67270
| Predictedsynthetic growth defect | FSW = 0.1962
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
| AT5G14170
| Predictedtwo hybridtwo hybrid | FSW = 0.0036
| Unknown | CHC1 |
| AT3G44530
| PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1865
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G64630
| PredictedPhenotypic Suppression | FSW = 0.1408
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G57300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0841
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G05055
| PredictedPhenotypic Enhancement | FSW = 0.0475
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G07370
| PredictedPhenotypic Enhancement | FSW = 0.3180
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
| AT2G36740
| PredictedPhenotypic Enhancement | FSW = 0.2130
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G37470
| PredictedAffinity Capture-Western | FSW = 0.0321
| Unknown | HISTONE H2B PUTATIVE |
| AT2G38560
| PredictedPhenotypic Suppression | FSW = 0.1106
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
| AT5G08630
| PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
| AT5G18620
| PredictedPhenotypic Enhancement | FSW = 0.0827
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT2G44950
| PredictedPhenotypic Enhancement | FSW = 0.2521
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT5G66130
| PredictedPhenotypic Enhancement | FSW = 0.1551
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
| AT5G40820
| Predictedsynthetic growth defect | FSW = 0.0931
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
| AT5G19910
| PredictedPhenotypic Enhancement | FSW = 0.2194
| Unknown | SOH1 FAMILY PROTEIN |
| AT3G07880
| PredictedPhenotypic Enhancement | FSW = 0.0164
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
| AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.2301
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT1G18090
| PredictedPhenotypic Enhancement | FSW = 0.0935
| Unknown | EXONUCLEASE PUTATIVE |
| AT1G24290
| PredictedPhenotypic Enhancement | FSW = 0.1669
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT1G29990
| PredictedPhenotypic Suppression | FSW = 0.1033
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT1G49540
| PredictedPhenotypic Enhancement | FSW = 0.0847
| Unknown | NUCLEOTIDE BINDING |
| AT1G51710
| PredictedPhenotypic Enhancement | FSW = 0.1907
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G52740
| PredictedPhenotypic Enhancement | FSW = 0.2978
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G77470
| PredictedPhenotypic Enhancement | FSW = 0.0886
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
| AT3G02820
| PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1395
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT3G18860
| PredictedPhenotypic Enhancement | FSW = 0.2168
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G22140
| PredictedPhenotypic Suppression | FSW = 0.1785
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT4G33240
| PredictedPhenotypic Enhancement | FSW = 0.2093
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
| AT5G10260
| PredictedPhenotypic Enhancement | FSW = 0.1396
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G10400 | PredictedAffinity Capture-Western | FSW = 0.1924
| Unknown | HISTONE H3 |
| AT5G10790
| PredictedPhenotypic Suppression | FSW = 0.0972
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
| AT5G25380
| PredictedPhenotypic Enhancement | FSW = 0.0241
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G27740
| PredictedPhenotypic Suppression | FSW = 0.1446
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G04020
| Predictedsynthetic growth defect | FSW = 0.2923
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
| AT1G10930
| Predictedsynthetic growth defect | FSW = 0.2021
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G32130
| PredictedPhenotypic Enhancement | FSW = 0.1021
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
| AT1G66740
| Predictedsynthetic growth defect | FSW = 0.2265
| Unknown | SGA2 |
| AT1G67190
| Predictedsynthetic growth defect | FSW = 0.2579
| Unknown | F-BOX FAMILY PROTEIN |
| AT2G02760
| Predictedsynthetic growth defect | FSW = 0.2666
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT2G37840
| Predictedbiochemical | FSW = 0.0115
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G12380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1188
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G42660
| Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2734
| Unknown | NUCLEOTIDE BINDING |
| AT3G58560
| Predictedsynthetic growth defect | FSW = 0.1353
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1444
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
| AT4G30870
| Predictedsynthetic growth defect | FSW = 0.1837
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT5G10960
| Predictedsynthetic growth defect | FSW = 0.1515
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT5G22840
| Predictedbiochemical | FSW = 0.0204
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G26680
| PredictedSynthetic Lethality | FSW = 0.2079
| Unknown | ENDONUCLEASE PUTATIVE |
| AT5G42190
| Predictedsynthetic growth defect | FSW = 0.0104
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G53770
| PredictedSynthetic Lethality | FSW = 0.1283
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT5G46030
| PredictedPhenotypic Enhancement | FSW = 0.1358
| Unknown | UNKNOWN PROTEIN |
| AT5G55310
| PredictedPhenotypic Suppression | FSW = 0.1322
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
| AT5G65180
| PredictedPhenotypic Enhancement | FSW = 0.1241
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
| AT5G66100
| PredictedPhenotypic Suppression | FSW = 0.1732
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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