Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66130 - ( ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) )
87 Proteins interacs with AT5G66130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56000 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0054
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G06510 | PredictedPhenotypic Enhancement | FSW = 0.1548
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT4G01370 | PredictedPhenotypic Enhancement | FSW = 0.0440
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G74560 | Predictedinterologs mapping | FSW = 0.0048
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G43530 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2846
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G28190 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1882
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1018
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G48190 | Predictedin vivoProtein-peptide | FSW = 0.0711
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT5G52640 | Predictedsynthetic growth defecttwo hybrid | FSW = 0.0184
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G16970 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1456
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT1G08130 | Predictedinterologs mappingReconstituted Complexbiochemical | FSW = 0.2344
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT4G26720 | PredictedPhenotypic Suppression | FSW = 0.1730
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G30860 | PredictedSynthetic Rescue | FSW = 0.0141
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT3G27640 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G21690 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSReconstituted Complexin vivoCo-purificationCo-expression | FSW = 0.1986
| Unknown | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G13330 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TAT BINDING PROTEIN 1-INTERACTING (INTERPROIPR010776) HAS 2425 BLAST HITS TO 2142 PROTEINS IN 283 SPECIES ARCHAE - 50 BACTERIA - 240 METAZOA - 929 FUNGI - 179 PLANTS - 47 VIRUSES - 23 OTHER EUKARYOTES - 957 (SOURCE NCBI BLINK) |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0854
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.1238
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0603
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G44200 | Predictedtwo hybrid | FSW = 0.0215
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT5G43250 | PredictedAffinity Capture-Western | FSW = 0.0222
| Unknown | NF-YC13 (NUCLEAR FACTOR Y SUBUNIT C13) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G27470 | PredictedAffinity Capture-Western | FSW = 0.0619
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.3103
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G65470 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2200
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT3G19210 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.2376
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G29570 | Predictedsynthetic growth defect | FSW = 0.1872
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT4G22380 | Predictedin vivotwo hybridAffinity Capture-MS | FSW = 0.0183
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G20160 | Predictedin vivotwo hybridAffinity Capture-MS | FSW = 0.0278
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G41150 | PredictedSynthetic Rescue | FSW = 0.1651
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | PredictedPhenotypic Suppression | FSW = 0.2833
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.2962
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G63960 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1778
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT2G42120 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.0720
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0949
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G54260 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2921
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G21790 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0307
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G40820 | PredictedProtein-peptidePhenotypic Suppression | FSW = 0.2996
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G20050 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G20850 | Predictedinterologs mappinginterologs mappingSynthetic LethalityPhenotypic Suppressionsynthetic growth defect | FSW = 0.2434
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G22880 | PredictedPhenotypic Enhancement | FSW = 0.0196
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G08260 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1184
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G63160 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted Complexin vivoCo-purification | FSW = 0.2800
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G77470 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSin vitroAffinity Capture-MSReconstituted Complexin vitroin vivoCo-purification | FSW = 0.1747
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT2G27120 | PredictedAffinity Capture-WesternReconstituted ComplexPhenotypic Enhancementsynthetic growth defect | FSW = 0.1646
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G17760 | Predictedin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.0347
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT5G22110 | PredictedAffinity Capture-Western | FSW = 0.0533
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G27740 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted Complexin vivoAffinity Capture-MSCo-purificationco-fractionationCo-fractionationinterologs mapping | FSW = 0.2603
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G05480 | Predictedin vitroin vitroin vivoAffinity Capture-MSAffinity Capture-Western | FSW = 0.1237
| Unknown | RAD9 |
AT1G04730 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defectSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3595
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G10930 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2786
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G66740 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.2239
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1891
| Unknown | F-BOX FAMILY PROTEIN |
AT2G02760 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1340
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2246
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2542
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G06670 | PredictedPhenotypic Suppression | FSW = 0.1086
| Unknown | BINDING |
AT3G18860 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1327
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G16850 | PredictedPhenotypic Enhancement | FSW = 0.0711
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT5G22010 | PredictedPhenotypic EnhancementAffinity Capture-Westerninterologs mapping | FSW = 0.2039
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G26360 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | CHAPERONIN PUTATIVE |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2530
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G63920 | PredictedPhenotypic Enhancement | FSW = 0.2637
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2415
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G07270 | Predictedinterologs mapping | FSW = 0.0679
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G55915 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | ZINC ION BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0901
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G67500 | Predictedsynthetic growth defect | FSW = 0.1619
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G20475 | Predictedtwo hybrid | FSW = 0.0497
| Unknown | MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.2127
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedSynthetic Lethality | FSW = 0.2793
| Unknown | NUCLEOTIDE BINDING |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.1248
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.1421
| Unknown | POLA3 DNA PRIMASE |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1551
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0847
| Unknown | BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0943
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G59440 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0594
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G67100 | Predictedinterologs mapping | FSW = 0.1430
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT2G16440 | PredictedPhenotypic Enhancement | FSW = 0.0326
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT1G67320 | PredictedSynthetic Lethality | FSW = 0.1113
| Unknown | DNA PRIMASE LARGE SUBUNIT FAMILY |
AT4G29170 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0729
| Unknown | ATMND1 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454